PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G17580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 925aa MW: 100694 Da PI: 6.579 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3.1e-18 | 30 | 87 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ ONIVA12G17580.1 30 YVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87 6789****************************************************97 PP | |||||||
2 | START | 170.6 | 1e-53 | 178 | 385 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++++ vi +g g+++l ONIVA12G17580.1 178 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIEL 270 68999*****************************************************.8888888888************************* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 ++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+ ONIVA12G17580.1 271 IYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRP 364 ***********999****************************9999999********************************************* PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s + ++k++ a+l++ + ONIVA12G17580.1 365 LYESPKILAQKMTIAALRHIR 385 ****************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 925 aa Download sequence |
MAAAAVGGRG ERLSSSSPTA AAPQVDAGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI 60 RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LNAMNKLLME ENDRLQKQVS 120 RLVYENGYMR TQLHNPSAAT TDTSCESVVT SGQHHQQQNP AVLHPQRDAN NPAGLLAIAE 180 ETLAEFMSKA TGTAVEWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI 240 LKDRPSWYRD CRCVDIIHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS 300 LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCEG GGSMIYIVDH VDLDAWSVPE 360 VLRPLYESPK ILAQKMTIAA LRHIRQIAHE SSGEIPYGAG RQPAVFRTFS QRLSRGFNDA 420 VSGFPDDGWS LLSSDGSEDI TISVNSSPNK LVGSHVSPNP LFSTVGGGIL CAKASMLLQN 480 VPPALLVRFL REHRSEWADP GVDAYSAASL RASPYAVPGL RTSGFMGSQV ILPLAHTLEH 540 EEFLEVIRLE GHGFSHDEVL WTIRVNYLFL CCWAGQVGFG GRHAAVLGHR MGLTFCSGFL 600 VDQGVLQLED ELLKKGGVMS WALGWASATE SVAPFRFRTL CSGVDENATS ASAQLVFAPI 660 DESFADDAPL LPSGFRVIPL DTKMDGPSAT RTLDLASALE VGPGGASRAS VEASGTCNRS 720 VLTIAFQFSY ENHLRESVAA MARSYVRAVM ASVQRVAVAI APSRLGPQIG MKHPPASPEA 780 LTLASWIGRS YRAHTGADIR WSDTEDADSP LALLWKHSDA ILCCSLKPAP MFTFANNAGL 840 DILETTLVNL QDISLEMILD DEGRKALCSE FPKIMQQGFT YLPGGVCKSS MGRQASYEQA 900 VAWKVLSDDD APHCLAFMLV NWTFM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30490.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G17580.1 |