PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G17410.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 162aa    MW: 17170 Da    PI: 8.4384
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G17410.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.64.8e-14731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr++L YPrGApsV+Ca+C++V
  ONIVA12G17410.2  7 CHGCRNILLYPRGAPSVCCAVCHAV 31
                     ************************9 PP

2zf-LSD148.51.4e-154771125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y+r+A+sVRC++CdtV
  ONIVA12G17410.2 47 CGGCRTLLMYTRNATSVRCSCCDTV 71
                     ************************9 PP

3zf-LSD1512.3e-1685109125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C+t+L+YP+GApsV+Ca+C+++
  ONIVA12G17410.2  85 CGQCQTVLMYPYGAPSVKCAICNFI 109
                      ***********************86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA  60
TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGPTTQSQN  120
VTVVVENPMT VDAKGKLVSN VVVGVTTGGK KINNKDYVID RT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-50LSD family protein