PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G17410.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 162aa MW: 17170 Da PI: 8.4384

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G17410.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.6	4.8e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsV+Ca+C++V ONIVA12G17410.2 7 CHGCRNILLYPRGAPSVCCAVCHAV 31 ************************9 PP
2	zf-LSD1	48.5	1.4e-15	47	71	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A+sVRC++CdtV ONIVA12G17410.2 47 CGGCRTLLMYTRNATSVRCSCCDTV 71 ************************9 PP
3	zf-LSD1	51	2.3e-16	85	109	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ ONIVA12G17410.2 85 CGQCQTVLMYPYGAPSVKCAICNFI 109 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA 60 TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGPTTQSQN 120 VTVVVENPMT VDAKGKLVSN VVVGVTTGGK KINNKDYVID RT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-50	LSD family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G17410.2