PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G17410.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 183aa MW: 19465.6 Da PI: 8.323

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G17410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.3	5.8e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsV+Ca+C++V ONIVA12G17410.1 7 CHGCRNILLYPRGAPSVCCAVCHAV 31 ************************9 PP
2	zf-LSD1	48.3	1.7e-15	47	71	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A+sVRC++CdtV ONIVA12G17410.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71 ************************9 PP
3	zf-LSD1	50.8	2.7e-16	85	109	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ ONIVA12G17410.1 85 CGQCQTVLMYPYGAPSVKCAICNFI 109 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA 60 TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRHL 120 PPNGTSYTVP STSAPTTQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGD IKVEEKKYFG 180 VPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-60	LSD family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G17410.1