PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G17410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 183aa    MW: 19465.6 Da    PI: 8.323
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G17410.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.35.8e-14731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr++L YPrGApsV+Ca+C++V
  ONIVA12G17410.1  7 CHGCRNILLYPRGAPSVCCAVCHAV 31
                     ************************9 PP

2zf-LSD148.31.7e-154771125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y+r+A+sVRC++CdtV
  ONIVA12G17410.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71
                     ************************9 PP

3zf-LSD150.82.7e-1685109125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C+t+L+YP+GApsV+Ca+C+++
  ONIVA12G17410.1  85 CGQCQTVLMYPYGAPSVKCAICNFI 109
                      ***********************86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA  60
TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRHL  120
PPNGTSYTVP STSAPTTQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGD IKVEEKKYFG  180
VPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.22e-60LSD family protein