PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G17350.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 447aa MW: 47306.7 Da PI: 6.0652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G17350.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54	3e-17	259	305	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq ONIVA12G17350.1 259 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 305 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MNQFVPDWNT TGMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE RTTAAAAAMA 60 EDESASWFQY PVDDVLEKDL FTELFGEMTA AGGGGGDVRR AACKEERGAV AAFQSRMMPP 120 PWPARGKAEF GDVDDVCGVS EVVMAAKMDG EAKVAAAEAV GESSMLTIGS SICGSNHVQT 180 PPAGAAPPPV GNGKAAAARR AHDTATVASS SMRSRSCTAK AEPRDSGSPS EDVEFESAAA 240 TCSPAQKTTT AKRRRAAEVH NLSERRRRDR INEKMKALQE LIPHCNKTDK ASMLDEAIEY 300 LKSLQLQLQM MWIGGGMAPP AVMFPAAGVH QYMQRMGAVG MGPPHMASLP RMPPFMAPPP 360 AAVQSSPVVS MADPYARCLA VDHLQPPSPM LAAAKNLQQQ QNTAEPPPPP PAGSLPPAAT 420 AQPLTPDDIL HKKYDNCSKS ESKGGTS

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MNQFVPDWNT TGMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE RTTAAAAAMA  60
EDESASWFQY PVDDVLEKDL FTELFGEMTA AGGGGGDVRR AACKEERGAV AAFQSRMMPP  120
PWPARGKAEF GDVDDVCGVS EVVMAAKMDG EAKVAAAEAV GESSMLTIGS SICGSNHVQT  180
PPAGAAPPPV GNGKAAAARR AHDTATVASS SMRSRSCTAK AEPRDSGSPS EDVEFESAAA  240
TCSPAQKTTT AKRRRAAEVH NLSERRRRDR INEKMKALQE LIPHCNKTDK ASMLDEAIEY  300
LKSLQLQLQM MWIGGGMAPP AVMFPAAGVH QYMQRMGAVG MGPPHMASLP RMPPFMAPPP  360
AAVQSSPVVS MADPYARCLA VDHLQPPSPM LAAAKNLQQQ QNTAEPPPPP PAGSLPPAAT  420
AQPLTPDDIL HKKYDNCSKS ESKGGTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	268	KRRRAAEVHNLSERRRR
2	253	269	KRRRAAEVHNLSERRRR
3	264	269	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-35	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G17350.1