PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16610.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 288aa    MW: 30327.8 Da    PI: 10.2433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16610.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-14119165455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +      K + a++L ++++Y+ksLq
  ONIVA12G16610.1 119 AHNLTEKRRRFKITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 165
                      8*************************9.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MGTTTTTLLP EQPLVDDHHL PAAAAAAPPS EEEMAAWLYP IVSGHEVAGG GWRSPEAQDD  60
RRAAPAPEKK QMEKMPAAAS PTTTMNKDET SDDSGERKKK KASSAAGKAS KHHHAAAGAH  120
NLTEKRRRFK ITERFRTLQR LVPGCDKSNQ ASTLDQTIQY MKSLQHQLKA MSVVGSPPAL  180
LYPAAVHPQS YMHPPPPPPP VTMPMHPGMV LAAPPPGAAP PPGPPAMVPF GAMLPYPPYP  240
AVLLPPPAAA TLYGRPPAPA PGVAARRHGS SGGGRISKSS SSSLCKKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129EKRRRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-15bHLH family protein