PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G15190.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 827aa MW: 90544.5 Da PI: 6.6071

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G15190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	71	92	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+Fs++ +L+ H+++H ONIVA12G15190.1 71 QCQMCSKVFSTSGSLREHMMMH 92 7*******************99 PP
2	zf-C2H2	15.1	6.6e-05	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksF + L H+r+H ONIVA12G15190.1 275 HRCNTCGKSFGSGQALGGHMRRH 297 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSPPTVVD LHMPLLSSCD 60 DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD 120 VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR 180 SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIIPK EEMDPNDFDH 240 ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR 300 KCNRQRGVAD RAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLCRPIM 360 TRVLILRLTT NPLFFPDASL SPLLSPLPQP KPPQLAAALA RPRRMNLGRE MASDVPQDDV 420 QCHFCGTYLR PRSFRKHQQR CKYNPDALTR ENLPASSIPA SATRAMHSEM ASDGPQENCQ 480 CSFCHKDFEG RSSCAKHELQ CKNNPDVHSQ TEPSGNAQGG IGSLDVHVPR RKRTARNQPL 540 PEQHLKKPAS DYAQGGTSDA PETPPKPTTS EVKVDSAVNA PDITIPDNKD PSVMQKQKKK 600 LDLNLQPHSD SSDQEEQADN FSSINDLSTI GTNSDKKKNT ITGVADTNIP DHKDPSRMQM 660 QIKLDLNLPP HDDSFSSMDD LNALVPADTN SDKEKKTDNG GAPADANSDK EKRTDNGSVP 720 TGTNSIKEKK TDNGGVDINI PDHKDPSARQ VQKKLSLNLP PCNDSSSSMD DLKTLAPTDT 780 NSDKETNTSN GGVDTNIPDH SDPSAMQTKN KLDFNLPPRN DSSDSLV

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence

MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSPPTVVD LHMPLLSSCD  60
DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD  120
VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR  180
SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIIPK EEMDPNDFDH  240
ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR  300
KCNRQRGVAD RAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLCRPIM  360
TRVLILRLTT NPLFFPDASL SPLLSPLPQP KPPQLAAALA RPRRMNLGRE MASDVPQDDV  420
QCHFCGTYLR PRSFRKHQQR CKYNPDALTR ENLPASSIPA SATRAMHSEM ASDGPQENCQ  480
CSFCHKDFEG RSSCAKHELQ CKNNPDVHSQ TEPSGNAQGG IGSLDVHVPR RKRTARNQPL  540
PEQHLKKPAS DYAQGGTSDA PETPPKPTTS EVKVDSAVNA PDITIPDNKD PSVMQKQKKK  600
LDLNLQPHSD SSDQEEQADN FSSINDLSTI GTNSDKKKNT ITGVADTNIP DHKDPSRMQM  660
QIKLDLNLPP HDDSFSSMDD LNALVPADTN SDKEKKTDNG GAPADANSDK EKRTDNGSVP  720
TGTNSIKEKK TDNGGVDINI PDHKDPSARQ VQKKLSLNLP PCNDSSSSMD DLKTLAPTDT  780
NSDKETNTSN GGVDTNIPDH SDPSAMQTKN KLDFNLPPRN DSSDSLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	3e-07	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G15190.1