PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G12070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 896aa MW: 98681.3 Da PI: 7.8345 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 7.1e-24 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + ONIVA12G12070.1 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 237 99*****************************544..455569************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ ONIVA12G12070.1 238 ENGELRVGVRRA 249 9999*****996 PP | |||||||
2 | Auxin_resp | 111.6 | 7.5e-37 | 274 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s+seFvv+++ ++++lk++ s+GmRfkm fe+e+++e+r++Gt+vgv d+dp+ W +SkWrsLk ONIVA12G12070.1 274 AWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYKESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGVGDSDPSGWADSKWRSLK 356 89*******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 896 aa Download sequence |
MAAAATAAAS PVEGLTGGGG GGGGGVDGLF VELWRACAGP LVTVPAVGER VFYLPQGHIE 60 QVEASTNQVA EQQGAPLYNL PWKIPCKVMN VELKAEPDTD EVYAQLTLLP EKQQDGNGSG 120 NGNVSKDKVE EEEVVPPAAT ERPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS 180 QHPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG 240 ELRVGVRRAM RQQANIPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPSEFVVP 300 RDLYKESLKR NHSIGMRFKM TFEGEEAAEQ RFTGTIVGVG DSDPSGWADS KWRSLKVRWD 360 EAASVPRPDR VSPWQIEPAN SPSPVNPLPA PRTKRARPNV LASSPDLSAV NKEVASKVMA 420 NSQQNGLPRA FHSQENMNLR SRFGDSNELN TSQKLTMWSS GSNQEKNNVS VQRELGSQSW 480 MQMRRPDGSS EILSGFQPLK DTRNPLSSFP SQISGNRSNT WNTINVHYPD QNANHNMYPG 540 TWSLMPPNTG FGVNQQNYLM TPDITLPQRS LNAKFGGNGA FTSLRAHGID QRSSGWLGHI 600 EPSSHIDDAS SSLIKPQPLV IDHNVQKAKG SSCMLFGISL DSPAKPELLI SPPSVAFDGK 660 LQQDALEEDE CSDPSKTVKP LDGSQHDSAT EKHQSCPDGT KNIQSKQQNG SSRSCKKVHK 720 QGIALGRSID LTKFTCYDEL IAELDQMFDF NGELNSSSKN WMVVYTDNEG DMMLVGDDPW 780 NEFCNMVHKI FIYTREEVQK MNPGALNSRS FVVCKNRRRH IHGRKESFRG VVVVAGALYV 840 SGKPRSTPFV DGACPGISCP LFVFDKFWVC FVEVLSYCMI CPVVVKGAEA KLPRPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.4 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G12070.1 |