PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G09670.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 480aa MW: 50171.4 Da PI: 9.7629

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G09670.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	242	264	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ H ONIVA12G09670.1 242 ACSQCGEVFTKADSLEHHQAIrH 264 6******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MALSTLLLPS SSSSSSKTAT ATDTSDRRRH HHHHNHTKRK KKPPPPPLSP TPRTPPPAGS 60 GSHRAMAASS KKSTKQVVVA AKTTTGHRPK KAAAAPTTPS RGAPSASAAP VSSSWEQLKS 120 LLSCRSATAA ARVHDPAAPS SALSRLRSHG AGACGASLCA IRDVVDAASS ASAASTAAAS 180 LDRDTTPLTR SSRRAHRAAT SSSGGGGGHH ASLRGLSGCY ECRAINVEPM SRRYPRPREL 240 CACSQCGEVF TKADSLEHHQ AIRHAVSELG PEDSGRNIVE IIFKSSWQKR DRPICQIDRI 300 LKVHNAARTV ARFEAYRDAV RTRCRATAAR AAADGNELLR FHPAALACPL GLNGATSLCD 360 DDDACGVCAA IRHGFAPWAG AHPLGVRTTA SSGRAHDCGA AAAAAQQAGG CRAMLVCRVI 420 AGRVRRNDDD GGAEEEEGAF DSVAGDEAAS SVYGNLEELF VANPRAILPC FVVIYRVVPE

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MALSTLLLPS SSSSSSKTAT ATDTSDRRRH HHHHNHTKRK KKPPPPPLSP TPRTPPPAGS  60
GSHRAMAASS KKSTKQVVVA AKTTTGHRPK KAAAAPTTPS RGAPSASAAP VSSSWEQLKS  120
LLSCRSATAA ARVHDPAAPS SALSRLRSHG AGACGASLCA IRDVVDAASS ASAASTAAAS  180
LDRDTTPLTR SSRRAHRAAT SSSGGGGGHH ASLRGLSGCY ECRAINVEPM SRRYPRPREL  240
CACSQCGEVF TKADSLEHHQ AIRHAVSELG PEDSGRNIVE IIFKSSWQKR DRPICQIDRI  300
LKVHNAARTV ARFEAYRDAV RTRCRATAAR AAADGNELLR FHPAALACPL GLNGATSLCD  360
DDDACGVCAA IRHGFAPWAG AHPLGVRTTA SSGRAHDCGA AAAAAQQAGG CRAMLVCRVI  420
AGRVRRNDDD GGAEEEEGAF DSVAGDEAAS SVYGNLEELF VANPRAILPC FVVIYRVVPE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	42	RRRHHHHHNHTKRKKK
2	38	75	KRKKKPPPPPLSPTPRTPPPAGSGSHRAMAASSKKSTK
3	39	76	KRKKKPPPPPLSPTPRTPPPAGSGSHRAMAASSKKSTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	6e-66	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G09670.1