PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G09610.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 513aa MW: 54656.4 Da PI: 8.7353 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.3e-11 | 128 | 152 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p ONIVA12G09610.3 128 EPDCSYYMRTGLCRFGMTCKFNHPP 152 789********************97 PP | |||||||
2 | zf-CCCH | 38.6 | 1.8e-12 | 173 | 197 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ ONIVA12G09610.3 173 QPECQYYLKTGTCKFGATCKFHHPR 197 799********************96 PP | |||||||
3 | zf-CCCH | 30.8 | 5e-10 | 219 | 243 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ ONIVA12G09610.3 219 EKECAYYLRTGQCKFASTCKFHHPQ 243 679********************97 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 379 | 404 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ ONIVA12G09610.3 379 DQPECQFYMKTGDCKFGAVCKFHHPK 404 689*********************96 PP | |||||||
5 | zf-CCCH | 37.3 | 4.7e-12 | 424 | 450 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ ONIVA12G09610.3 424 PGEPVCTFYSRYGICKFGPNCKFDHPM 450 5789*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence |
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEGGGGVI CSVLLVRGSR 60 DGAAMSRAVG VCGRSWGPRG RWLVRVPRWS LGGGDDSMGT PGNKAMWQMT LGGGESMEST 120 PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PPNRKLAVAA ARMNGEYPYR VGQPECQYYL 180 KTGTCKFGAT CKFHHPREKA ALANRVQLNV LGYPMRPNEK ECAYYLRTGQ CKFASTCKFH 240 HPQPSNTMVA IRNSMYSPGQ SATSPGQHTY PGAVTNWTLS RSASFIASPR WPGHSGYAQV 300 IVPQGLVQVP GWNPYAAQMG SSSPDDQQRT PVTTQYYGSR QSETGGMGDH GMYQSYQGGS 360 VPVGVYTVQG ENIFPERPDQ PECQFYMKTG DCKFGAVCKF HHPKERLVPA PNCALNSLGL 420 PLRPGEPVCT FYSRYGICKF GPNCKFDHPM GTLMYGSATS PRGDVSSMHY QLSPSPGHPG 480 ILLDGGSGRS HRVPQSDSQQ IPSGDGNAER EAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-152 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G09610.3 |