PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09610.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 513aa    MW: 54656.4 Da    PI: 8.7353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09610.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.3e-11128152327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++++rtG C++G +CkF+H+p
  ONIVA12G09610.3 128 EPDCSYYMRTGLCRFGMTCKFNHPP 152
                      789********************97 PP

2zf-CCCH38.61.8e-12173197327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA12G09610.3 173 QPECQYYLKTGTCKFGATCKFHHPR 197
                      799********************96 PP

3zf-CCCH30.85e-10219243327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+ ++CkF+H++
  ONIVA12G09610.3 219 EKECAYYLRTGQCKFASTCKFHHPQ 243
                      679********************97 PP

4zf-CCCH39.31.1e-12379404227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA12G09610.3 379 DQPECQFYMKTGDCKFGAVCKFHHPK 404
                      689*********************96 PP

5zf-CCCH37.34.7e-12424450127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  ONIVA12G09610.3 424 PGEPVCTFYSRYGICKFGPNCKFDHPM 450
                      5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEGGGGVI CSVLLVRGSR  60
DGAAMSRAVG VCGRSWGPRG RWLVRVPRWS LGGGDDSMGT PGNKAMWQMT LGGGESMEST  120
PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PPNRKLAVAA ARMNGEYPYR VGQPECQYYL  180
KTGTCKFGAT CKFHHPREKA ALANRVQLNV LGYPMRPNEK ECAYYLRTGQ CKFASTCKFH  240
HPQPSNTMVA IRNSMYSPGQ SATSPGQHTY PGAVTNWTLS RSASFIASPR WPGHSGYAQV  300
IVPQGLVQVP GWNPYAAQMG SSSPDDQQRT PVTTQYYGSR QSETGGMGDH GMYQSYQGGS  360
VPVGVYTVQG ENIFPERPDQ PECQFYMKTG DCKFGAVCKF HHPKERLVPA PNCALNSLGL  420
PLRPGEPVCT FYSRYGICKF GPNCKFDHPM GTLMYGSATS PRGDVSSMHY QLSPSPGHPG  480
ILLDGGSGRS HRVPQSDSQQ IPSGDGNAER EAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152C3H family protein