PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09610.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 454aa    MW: 48677.6 Da    PI: 8.2342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09610.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.8e-116993327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++ C++++rtG C++G +CkF+H+p
  ONIVA12G09610.2 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93
                     789********************97 PP

2zf-CCCH38.81.6e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA12G09610.2 114 QPECQYYLKTGTCKFGATCKFHHPR 138
                      799********************96 PP

3zf-CCCH314.3e-10160184327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+ ++CkF+H++
  ONIVA12G09610.2 160 EKECAYYLRTGQCKFASTCKFHHPQ 184
                      679********************97 PP

4zf-CCCH39.59.4e-13320345227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA12G09610.2 320 DQPECQFYMKTGDCKFGAVCKFHHPK 345
                      689*********************96 PP

5zf-CCCH37.54e-12365391127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  ONIVA12G09610.2 365 PGEPVCTFYSRYGICKFGPNCKFDHPM 391
                      5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCKF  180
HHPQPSNTMV AIRNSMYSPG QSATSPGQHT YPGAVTNWTL SRSASFIASP RWPGHSGYAQ  240
VIVPQGLVQV PGWNPYAAQM GSSSPDDQQR TPVTTQYYGS RQSETGGMGD HGMYQSYQGG  300
SVPVGVYTVQ GENIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERLVP APNCALNSLG  360
LPLRPGEPVC TFYSRYGICK FGPNCKFDHP MGTLMYGSAT SPRGDVSSMH YQLSPSPGHP  420
GILLDGGSGR SHRVPQSDSQ QIPSGDGNAE REAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153C3H family protein