PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G09610.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 395aa MW: 42315.5 Da PI: 7.7492

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G09610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.2e-11	69	93	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p ONIVA12G09610.1 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93 789********************97 PP
2	zf-CCCH	39	1.3e-12	114	138	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ ONIVA12G09610.1 114 QPECQYYLKTGTCKFGATCKFHHPR 138 799********************96 PP
3	zf-CCCH	39.7	7.9e-13	261	286	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ ONIVA12G09610.1 261 DQPECQFYMKTGDCKFGAVCKFHHPK 286 689*********************96 PP
4	zf-CCCH	37.7	3.4e-12	306	332	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ ONIVA12G09610.1 306 PGEPVCTFYSRYGICKFGPNCKFDHPM 332 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES 60 TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY 120 LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCYA 180 QVIVPQGLVQ VPGWNPYAAQ MGSSSPDDQQ RTPVTTQYYG SRQSETGGMG DHGMYQSYQG 240 GSVPVGVYTV QGENIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERLV PAPNCALNSL 300 GLPLRPGEPV CTFYSRYGIC KFGPNCKFDH PMGTLMYGSA TSPRGDVSSM HYQLSPSPGH 360 PGILLDGGSG RSHRVPQSDS QQIPSGDGNA EREAS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCYA  180
QVIVPQGLVQ VPGWNPYAAQ MGSSSPDDQQ RTPVTTQYYG SRQSETGGMG DHGMYQSYQG  240
GSVPVGVYTV QGENIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERLV PAPNCALNSL  300
GLPLRPGEPV CTFYSRYGIC KFGPNCKFDH PMGTLMYGSA TSPRGDVSSM HYQLSPSPGH  360
PGILLDGGSG RSHRVPQSDS QQIPSGDGNA EREAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-135	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G09610.1