PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 395aa    MW: 42315.5 Da    PI: 7.7492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09610.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-116993327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++ C++++rtG C++G +CkF+H+p
  ONIVA12G09610.1 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93
                     789********************97 PP

2zf-CCCH391.3e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA12G09610.1 114 QPECQYYLKTGTCKFGATCKFHHPR 138
                      799********************96 PP

3zf-CCCH39.77.9e-13261286227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA12G09610.1 261 DQPECQFYMKTGDCKFGAVCKFHHPK 286
                      689*********************96 PP

4zf-CCCH37.73.4e-12306332127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  ONIVA12G09610.1 306 PGEPVCTFYSRYGICKFGPNCKFDHPM 332
                      5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCYA  180
QVIVPQGLVQ VPGWNPYAAQ MGSSSPDDQQ RTPVTTQYYG SRQSETGGMG DHGMYQSYQG  240
GSVPVGVYTV QGENIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERLV PAPNCALNSL  300
GLPLRPGEPV CTFYSRYGIC KFGPNCKFDH PMGTLMYGSA TSPRGDVSSM HYQLSPSPGH  360
PGILLDGGSG RSHRVPQSDS QQIPSGDGNA EREAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-135C3H family protein