PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G08230.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 508aa    MW: 54967.6 Da    PI: 6.5579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G08230.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09109134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++G C++G +CkF+H+
  ONIVA12G08230.2 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134
                      5789*********************8 PP

2zf-CCCH25.91.7e-08219241325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +e+C++++  G Ck+G  Ck+ H
  ONIVA12G08230.2 219 QEECKYYSTPGGCKFGKACKYLH 241
                      699******************** PP

3zf-CCCH34.63.1e-11266290226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  ONIVA12G08230.2 266 GEKECPYYMRTGSCKYATNCKFHHP 290
                      7899********************9 PP

4zf-CCCH19.91.3e-06413439127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  ONIVA12G08230.2 413 PGQPECQHFVKSGFCKFRMKCKYHHPR 439
                      5789*********************96 PP

5zf-CCCH23.87.9e-08458483227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G Ck+G+ C ++H++
  ONIVA12G08230.2 458 DQPVCTYYGRYGVCKFGPACAYNHPF 483
                      6899********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD  180
ISPEVDSLII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE ECKYYSTPGG CKFGKACKYL  240
HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP  300
QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP  360
EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH  420
FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN  480
HPFNFSPVPA AGPPLLPAQY PTPGNYTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.21e-62C3H family protein