PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G08230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 528aa MW: 57205 Da PI: 6.5588 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.7e-09 | 109 | 134 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ ONIVA12G08230.1 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134 5789*********************8 PP | |||||||
2 | zf-CCCH | 25.9 | 1.8e-08 | 239 | 261 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H ONIVA12G08230.1 239 QEECKYYSTPGGCKFGKACKYLH 261 699******************** PP | |||||||
3 | zf-CCCH | 34.6 | 3.3e-11 | 286 | 310 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ ONIVA12G08230.1 286 GEKECPYYMRTGSCKYATNCKFHHP 310 7899********************9 PP | |||||||
4 | zf-CCCH | 19.9 | 1.3e-06 | 433 | 459 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ ONIVA12G08230.1 433 PGQPECQHFVKSGFCKFRMKCKYHHPR 459 5789*********************96 PP | |||||||
5 | zf-CCCH | 23.7 | 8.3e-08 | 478 | 503 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ ONIVA12G08230.1 478 DQPVCTYYGRYGVCKFGPACAYNHPF 503 6899********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence |
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL 60 PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF 120 GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD 180 ISPEVDSLGF ADKGSASNLE NFKKYSYEII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE 240 ECKYYSTPGG CKFGKACKYL HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK 300 YATNCKFHHP DPSNVASKDP QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI 360 APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG 420 HQQVPSEEYP ERPGQPECQH FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP 480 VCTYYGRYGV CKFGPACAYN HPFNFSPVPA AGPPLLPAQY PTPGNYTL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-58 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G08230.1 |