PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G04980.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 687aa MW: 78050.3 Da PI: 6.3003

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G04980.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28	3.7e-09	45	70	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++G Ck+G +C ++H+ ONIVA12G04980.2 45 PGEPDCSYYVKFGSCKFGISCVYNHP 70 5789*********************9 PP
2	zf-CCCH	29.1	1.7e-09	91	117	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ ++G Ck+G +C+F+H+p ONIVA12G04980.2 91 PGEPDCSYYVKFGSCKFGMNCRFNHPP 117 5789*********************96 PP
3	zf-CCCH	34.3	4e-11	158	183	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ G+Ck+G +CkF H+ ONIVA12G04980.2 158 PGTGLCSYYMNRGICKFGTNCKFDHP 183 5799*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MPQDDDWFWG RPTPVVVGDG ETTSKPKPPV AGKTKKVEEQ HPRRPGEPDC SYYVKFGSCK 60 FGISCVYNHP DPRPQHGADD KKPAEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRMP 120 VPPQQEYFSG NACHCHHIEG KSKVEQVKLN VLGLPLRPGT GLCSYYMNRG ICKFGTNCKF 180 DHPDPGSDHE KWVVSSNANQ VSSQVNIYSV LDHGESNEHT FTSEEVHQPG IPSFHQGISY 240 TRDQLLQLCQ NVEVPKDILK FCQNINVELN GEDKMSGFGA EKDHVQTPSY KRFDATDSRD 300 WHSRSAQTNW EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQR GIISGKDEVL 360 KTLKSILNTF TPKMFDLQKG QLIETRISSA DILKDVINLI FEKIVAEPAF CSTYAQLCTY 420 LNQNLTPFPP EDCDCEEITF KQALSNKCQE IFESAHTVCS EIGKLIGQDR EMEQRDKERV 480 VKLETLGNIN FIRALLKKKL ITNKIIDHIV QAVMDCCKFR FEPLGKVDLL NIIFEGMLDS 540 DSAGAESNIC VNAMIGGNKS SIASNDVEMT RKNVNRQNEE AILQKSYDEV PNNKMDPQKN 600 YADGAISYLI EKEKPTNLES SVRICRGGCS ISEIMELVVD AGAVEGSDEH FMATLLFIKP 660 EYREIFLTLD TREGRLGWLK RMYKVKE

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MPQDDDWFWG RPTPVVVGDG ETTSKPKPPV AGKTKKVEEQ HPRRPGEPDC SYYVKFGSCK  60
FGISCVYNHP DPRPQHGADD KKPAEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRMP  120
VPPQQEYFSG NACHCHHIEG KSKVEQVKLN VLGLPLRPGT GLCSYYMNRG ICKFGTNCKF  180
DHPDPGSDHE KWVVSSNANQ VSSQVNIYSV LDHGESNEHT FTSEEVHQPG IPSFHQGISY  240
TRDQLLQLCQ NVEVPKDILK FCQNINVELN GEDKMSGFGA EKDHVQTPSY KRFDATDSRD  300
WHSRSAQTNW EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQR GIISGKDEVL  360
KTLKSILNTF TPKMFDLQKG QLIETRISSA DILKDVINLI FEKIVAEPAF CSTYAQLCTY  420
LNQNLTPFPP EDCDCEEITF KQALSNKCQE IFESAHTVCS EIGKLIGQDR EMEQRDKERV  480
VKLETLGNIN FIRALLKKKL ITNKIIDHIV QAVMDCCKFR FEPLGKVDLL NIIFEGMLDS  540
DSAGAESNIC VNAMIGGNKS SIASNDVEMT RKNVNRQNEE AILQKSYDEV PNNKMDPQKN  600
YADGAISYLI EKEKPTNLES SVRICRGGCS ISEIMELVVD AGAVEGSDEH FMATLLFIKP  660
EYREIFLTLD TREGRLGWLK RMYKVKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-31	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G04980.2