PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G04980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 704aa MW: 79855.4 Da PI: 6.1291 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 45 | 70 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++G Ck+G +C ++H+ ONIVA12G04980.1 45 PGEPDCSYYVKFGSCKFGISCVYNHP 70 5789*********************9 PP | |||||||
2 | zf-CCCH | 29.1 | 1.8e-09 | 91 | 117 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ ++G Ck+G +C+F+H+p ONIVA12G04980.1 91 PGEPDCSYYVKFGSCKFGMNCRFNHPP 117 5789*********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 4.1e-11 | 158 | 183 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ G+Ck+G +CkF H+ ONIVA12G04980.1 158 PGTGLCSYYMNRGICKFGTNCKFDHP 183 5799*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence |
MPQDDDWFWG RPTPVVVGDG ETTSKPKPPV AGKTKKVEEQ HPRRPGEPDC SYYVKFGSCK 60 FGISCVYNHP DPRPQHGADD KKPAEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRMP 120 VPPQQEYFSG NACHCHHIEG KSKVEQVKLN VLGLPLRPGT GLCSYYMNRG ICKFGTNCKF 180 DHPDPGSDHE KWVVSSNANQ VSSQVNIYSV LDHGESNEHT FTSEEVHQPG IPSFHQGISY 240 TRDQLLQLCQ NVEVPKDILK FCQNINVELN GEDKMSGFGA EKDHVQTPSY KRFDATDSRD 300 WHSRSAQTNW EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQD DPISVLVKAE 360 VPLSIQRGII SGKDEVLKTL KSILNTFTPK MFDLQKGQLI ETRISSADIL KDVINLIFEK 420 IVAEPAFCST YAQLCTYLNQ NLTPFPPEDC DCEEITFKQA LSNKCQEIFE SAHTVCSEIG 480 KLIGQDREME QRDKERVVKL ETLGNINFIR ALLKKKLITN KIIDHIVQAV MDCCKFRFEP 540 LGKVDLLNII FEGMLDSDSA GAESNICVNA MIGGNKSSIA SNDVEMTRKN VNRQNEEAIL 600 QKSYDEVPNN KMDPQKNYAD GAISYLIEKE KPTNLESSVR ICRGGCSISE IMELVVDAGA 660 VEGSDEHFMA TLLFIKPEYR EIFLTLDTRE GRLGWLKRMY KVKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 3e-31 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G04980.1 |