PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G04980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 704aa    MW: 79855.4 Da    PI: 6.1291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G04980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-094570126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C+++ ++G Ck+G +C ++H+
  ONIVA12G04980.1 45 PGEPDCSYYVKFGSCKFGISCVYNHP 70
                     5789*********************9 PP

2zf-CCCH29.11.8e-0991117127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ ++G Ck+G +C+F+H+p
  ONIVA12G04980.1  91 PGEPDCSYYVKFGSCKFGMNCRFNHPP 117
                      5789*********************96 PP

3zf-CCCH34.34.1e-11158183126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G +CkF H+
  ONIVA12G04980.1 158 PGTGLCSYYMNRGICKFGTNCKFDHP 183
                      5799*********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MPQDDDWFWG RPTPVVVGDG ETTSKPKPPV AGKTKKVEEQ HPRRPGEPDC SYYVKFGSCK  60
FGISCVYNHP DPRPQHGADD KKPAEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRMP  120
VPPQQEYFSG NACHCHHIEG KSKVEQVKLN VLGLPLRPGT GLCSYYMNRG ICKFGTNCKF  180
DHPDPGSDHE KWVVSSNANQ VSSQVNIYSV LDHGESNEHT FTSEEVHQPG IPSFHQGISY  240
TRDQLLQLCQ NVEVPKDILK FCQNINVELN GEDKMSGFGA EKDHVQTPSY KRFDATDSRD  300
WHSRSAQTNW EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQD DPISVLVKAE  360
VPLSIQRGII SGKDEVLKTL KSILNTFTPK MFDLQKGQLI ETRISSADIL KDVINLIFEK  420
IVAEPAFCST YAQLCTYLNQ NLTPFPPEDC DCEEITFKQA LSNKCQEIFE SAHTVCSEIG  480
KLIGQDREME QRDKERVVKL ETLGNINFIR ALLKKKLITN KIIDHIVQAV MDCCKFRFEP  540
LGKVDLLNII FEGMLDSDSA GAESNICVNA MIGGNKSSIA SNDVEMTRKN VNRQNEEAIL  600
QKSYDEVPNN KMDPQKNYAD GAISYLIEKE KPTNLESSVR ICRGGCSISE IMELVVDAGA  660
VEGSDEHFMA TLLFIKPEYR EIFLTLDTRE GRLGWLKRMY KVKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-31C3H family protein