PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G04960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 550aa    MW: 62890.2 Da    PI: 6.8352
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G04960.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.9e-082850527
                     --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                      C +++r+G CkyG +C+F+H+p
  ONIVA12G04960.1 28 DCLHYLRFGRCKYGMNCRFNHPP 50
                     699******************96 PP

2zf-CCCH35.32e-1190115126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G++CkF+H+
  ONIVA12G04960.1  90 PGTGLCSYYMNRGICKFGSNCKFHHP 115
                      5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MGCLYNHPAK HAGGCDKLEH PQRPGEHDCL HYLRFGRCKY GMNCRFNHPP DRLPQQQVYF  60
PWKACHCHHS EGKSEAEHVK LNFLGLPLRP GTGLCSYYMN RGICKFGSNC KFHHPNSGSG  120
HEKWDGSLQT NQISSGVNIY SVLDHGELNE QPVPSIDDFQ RGNSCFQPAE QTRYTRDQLL  180
KLRETVDVPK DIMKLIQDIN VELRAEDESR APNETNYVPT LSYKRFQETD SHDWHSRSLQ  240
TPVVAEEEKS QDDTREAKEP YAFGWKQKEF NKQDQKSFQS DSKAQAGPTL ALHKAEDPWS  300
IQRSTVPEKY KVLKTVKGIL NLLTPEKFDI LKDQLIEAGI TRTDILKDVI DLILEKAVAE  360
PTLCPMYAQF CSYLNENLTA FPPKDTHCEQ ITFKQALSDK CQQAFEIARN VRADIYKLTG  420
REQEMERRDK ERLVKHQILG KIRLIRDLLK QKMVPDKIVH HIAQAVTDCE NFHFEPLENV  480
DLLNIIFDGV LDSVLPGTEA NKVVNAIIGI EKCSIASNDA GIIHKDVNRR NEEAKLQKSS  540
NDIPNNLIDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.13e-24C3H family protein