PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G04960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 550aa MW: 62890.2 Da PI: 6.8352 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.9e-08 | 28 | 50 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++r+G CkyG +C+F+H+p ONIVA12G04960.1 28 DCLHYLRFGRCKYGMNCRFNHPP 50 699******************96 PP | |||||||
2 | zf-CCCH | 35.3 | 2e-11 | 90 | 115 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ G+Ck+G++CkF+H+ ONIVA12G04960.1 90 PGTGLCSYYMNRGICKFGSNCKFHHP 115 5799*********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence |
MGCLYNHPAK HAGGCDKLEH PQRPGEHDCL HYLRFGRCKY GMNCRFNHPP DRLPQQQVYF 60 PWKACHCHHS EGKSEAEHVK LNFLGLPLRP GTGLCSYYMN RGICKFGSNC KFHHPNSGSG 120 HEKWDGSLQT NQISSGVNIY SVLDHGELNE QPVPSIDDFQ RGNSCFQPAE QTRYTRDQLL 180 KLRETVDVPK DIMKLIQDIN VELRAEDESR APNETNYVPT LSYKRFQETD SHDWHSRSLQ 240 TPVVAEEEKS QDDTREAKEP YAFGWKQKEF NKQDQKSFQS DSKAQAGPTL ALHKAEDPWS 300 IQRSTVPEKY KVLKTVKGIL NLLTPEKFDI LKDQLIEAGI TRTDILKDVI DLILEKAVAE 360 PTLCPMYAQF CSYLNENLTA FPPKDTHCEQ ITFKQALSDK CQQAFEIARN VRADIYKLTG 420 REQEMERRDK ERLVKHQILG KIRLIRDLLK QKMVPDKIVH HIAQAVTDCE NFHFEPLENV 480 DLLNIIFDGV LDSVLPGTEA NKVVNAIIGI EKCSIASNDA GIIHKDVNRR NEEAKLQKSS 540 NDIPNNLIDP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 3e-24 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G04960.1 |