PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G03970.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 477aa MW: 51686.6 Da PI: 5.3442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G03970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.8	5e-07	233	254	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H ONIVA12G03970.1 233 FCGICGKGFKRDANLRMHMRGH 254 6*******************98 PP
2	zf-C2H2	10.7	0.0017	319	342	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ Cg k+Fs +Lk+H + + ONIVA12G03970.1 319 HVCGRCGaKRFSVMADLKTHEKHC 342 79******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHTDWSPDTM 60 LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS 120 LKNSSFLSRT TPPPAAAAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKG 180 WTNGGAMDEF VGAAGDEQDA RENPAAAAAA EEEEKYEVLQ LEEDEILAPH THFCGICGKG 240 FKRDANLRMH MRGHGDEYKS AAALAKPPPP PEGEEQPERR YSCPHAGCKR NRMHASFQPL 300 KTILCVKNHY KRSHCEKRHV CGRCGAKRFS VMADLKTHEK HCGRDRWLCS CGTTFSRKDK 360 LFAHVALFQG HAPALPPPPP PPPTTTTSTA ASGRRRHKQE ETEFTWGGGG GGDEFLDVKG 420 IAGVGSGSGG GDEFFSAGSF GAMDFGFGQL DASLAMLLPS ESEQFAGDHQ EENGDDK

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHTDWSPDTM  60
LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS  120
LKNSSFLSRT TPPPAAAAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKG  180
WTNGGAMDEF VGAAGDEQDA RENPAAAAAA EEEEKYEVLQ LEEDEILAPH THFCGICGKG  240
FKRDANLRMH MRGHGDEYKS AAALAKPPPP PEGEEQPERR YSCPHAGCKR NRMHASFQPL  300
KTILCVKNHY KRSHCEKRHV CGRCGAKRFS VMADLKTHEK HCGRDRWLCS CGTTFSRKDK  360
LFAHVALFQG HAPALPPPPP PPPTTTTSTA ASGRRRHKQE ETEFTWGGGG GGDEFLDVKG  420
IAGVGSGSGG GDEFFSAGSF GAMDFGFGQL DASLAMLLPS ESEQFAGDHQ EENGDDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	8e-78	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G03970.1