PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G01340.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 298aa    MW: 34468.4 Da    PI: 7.2213
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G01340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-0681102627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      Cr+++++G+Ck+   Ck++H++
  ONIVA12G01340.1  81 CRYYMKFGECKHMTFCKYNHPK 102
                      ********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MAFAESIWTF MPGKKGSVVQ GPNTRTLTNA HDGILDDINC AQIAGKHVGD HSNCANVIKA  60
GVISLLGKLV QYPERPGEPF CRYYMKFGEC KHMTFCKYNH PKDRFSCKTT NTIRSESLCL  120
HDQVFVCICG EKLLFHTNFN TTAVKELVVF ALQRRNIKYC DIYVTWLIPM EYERMDELID  180
RAVRDNNNDL FYYVNLPPEL INSYKDTWVT FLSDFSRYII HQLLQYLNDT FGDPPSWIAD  240
ISWVPDMWKT YNYSPNNNST LWTPRYTLDL NSCSHFAKNF LNHFGREVTA ANLALMLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-11C3H family protein