PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G12740.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 388aa    MW: 41974.4 Da    PI: 8.1281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G12740.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.7e-115982326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  ONIVA11G12740.2 59 EPDCSYYMRTGLCRFGMTCKFNHP 82
                     789********************8 PP

2zf-CCCH391.3e-12104128327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA11G12740.2 104 QPECQYYLKTGTCKFGATCKFHHPR 128
                      799********************96 PP

3zf-CCCH24.74.2e-08150169322
                      S---SGGGGTS--TTTTT-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCk 22 
                      +++C +++rtG+Ck+G++C+
  ONIVA11G12740.2 150 EKECAYYLRTGQCKFGSTCH 169
                      679****************8 PP

4zf-CCCH39.87.7e-13255280227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA11G12740.2 255 DQPECQFYMKTGDCKFGAVCKFHHPK 280
                      689*********************96 PP

5zf-CCCH38.61.7e-12300326127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  ONIVA11G12740.2 300 PGEPICTFYSRYGICKFGPNCKFDHPM 326
                      5799*********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCHS SYAQVIVPPG  180
LVQVPGWNPY AAQIGSSSSD DQQRTAGGAQ YYTGSRHSET PNMGDQGMFS SYQAGSVPLG  240
LYTVQRESIF PERPDQPECQ FYMKTGDCKF GAVCKFHHPK ERIIPTPNCA LSSLGLPLRP  300
GEPICTFYSR YGICKFGPNC KFDHPMGTVM YGLATSPTGD VSARRMLAPV PAHSEVSPDN  360
VSGRSRRITH SDSQQIPSGE RGTEREAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-142C3H family protein