PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G12740.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 504aa MW: 54008.8 Da PI: 8.2056

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G12740.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.1	9.2e-11	119	142	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ ONIVA11G12740.1 119 EPDCSYYMRTGLCRFGMTCKFNHP 142 789********************8 PP
2	zf-CCCH	38.6	1.8e-12	164	188	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ ONIVA11G12740.1 164 QPECQYYLKTGTCKFGATCKFHHPR 188 799********************96 PP
3	zf-CCCH	36.4	8.9e-12	210	234	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ ONIVA11G12740.1 210 EKECAYYLRTGQCKFGSTCKFHHPQ 234 679********************97 PP
4	zf-CCCH	39.3	1.1e-12	371	396	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ ONIVA11G12740.1 371 DQPECQFYMKTGDCKFGAVCKFHHPK 396 689*********************96 PP
5	zf-CCCH	38.2	2.4e-12	416	442	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ ONIVA11G12740.1 416 PGEPICTFYSRYGICKFGPNCKFDHPM 442 5799*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEGALC FGHSHNADMF YNVDTLSVAT 60 PLMGRISFGA AREGLSAAAT AVAVAASVIG PHSSDEEAMW QMNLGEAMEA GPYPERIGEP 120 DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA 180 TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV 240 AVRGSVYSPG QSVTSPSQHT YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV 300 PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV 360 QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI 420 CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR 480 SRRITHSDSQ QIPSGERGTE REAS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEGALC FGHSHNADMF YNVDTLSVAT  60
PLMGRISFGA AREGLSAAAT AVAVAASVIG PHSSDEEAMW QMNLGEAMEA GPYPERIGEP  120
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  180
TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV  240
AVRGSVYSPG QSVTSPSQHT YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV  300
PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV  360
QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI  420
CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR  480
SRRITHSDSQ QIPSGERGTE REAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-157	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G12740.1