PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G12740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 504aa    MW: 54008.8 Da    PI: 8.2056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G12740.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.2e-11119142326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  ONIVA11G12740.1 119 EPDCSYYMRTGLCRFGMTCKFNHP 142
                      789********************8 PP

2zf-CCCH38.61.8e-12164188327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA11G12740.1 164 QPECQYYLKTGTCKFGATCKFHHPR 188
                      799********************96 PP

3zf-CCCH36.48.9e-12210234327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  ONIVA11G12740.1 210 EKECAYYLRTGQCKFGSTCKFHHPQ 234
                      679********************97 PP

4zf-CCCH39.31.1e-12371396227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA11G12740.1 371 DQPECQFYMKTGDCKFGAVCKFHHPK 396
                      689*********************96 PP

5zf-CCCH38.22.4e-12416442127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  ONIVA11G12740.1 416 PGEPICTFYSRYGICKFGPNCKFDHPM 442
                      5799*********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEGALC FGHSHNADMF YNVDTLSVAT  60
PLMGRISFGA AREGLSAAAT AVAVAASVIG PHSSDEEAMW QMNLGEAMEA GPYPERIGEP  120
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  180
TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV  240
AVRGSVYSPG QSVTSPSQHT YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV  300
PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV  360
QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI  420
CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR  480
SRRITHSDSQ QIPSGERGTE REAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157C3H family protein