PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G11880.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 432aa MW: 44099.6 Da PI: 7.0193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G11880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	258	305	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA11G11880.1 258 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 305 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD 60 ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA 120 ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG 180 SKARGKDAAT SIAKSPEPGT KAKKCKLSAD AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE 240 PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY 300 VQSLQRQVEF LSMKLSTVNP QLDFDVDNFI PKDQANDPSM PAPLSLPPPP PPLSYSPEGA 360 SPGICYASSQ GTAMQSVVTS TKHLETAPTF ANHHVIPVPS LDGFHSAHSQ AGSCMWEDDL 420 QSVVQMGFRG NT

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD  60
ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA  120
ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG  180
SKARGKDAAT SIAKSPEPGT KAKKCKLSAD AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE  240
PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY  300
VQSLQRQVEF LSMKLSTVNP QLDFDVDNFI PKDQANDPSM PAPLSLPPPP PPLSYSPEGA  360
SPGICYASSQ GTAMQSVVTS TKHLETAPTF ANHHVIPVPS LDGFHSAHSQ AGSCMWEDDL  420
QSVVQMGFRG NT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	203	RKRKAPGSKARGKDAATSIAKSPEPGTKAK
2	174	206	RKRKAPGSKARGKDAATSIAKSPEPGTKAKKCK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-54	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G11880.1