PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G20420.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 658aa    MW: 67793 Da    PI: 6.481
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G20420.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.97.8e-932966572374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      ve+L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps++++++++ +l a+k+fsevsP+l+
  ONIVA10G20420.1 296 VEQLAEAAKLAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQ 385
                      789*************************999555566******************99....999999*************************** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+hlt+ qa+l+++ g+ ++H++Dfdi++G QW++L+q+La+  ++++ l++T+++sp+s++  el+ ++e+L+ fA+elgv f+f+v+   ++
  ONIVA10G20420.1 386 FAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQ-LRPAAALKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVF---NI 475
                      *****************************************7.46788****************************************9...77 PP

             GRAS 187 edleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++l++ eL ++ + g+a+aV+l +   +          ++++vL+lvk+l +kvvv v++ +d+++ +F+++++++++  ++l++s++a  +++
  ONIVA10G20420.1 476 DTLDPAELlAIATaGDAVAVHLPVGPAHAA--------ATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAV-GTD 560
                      77777665366668**********999997........5678*********************************************998.788 PP

             GRAS 279 seerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++++k+Er l++++i+++v +++++ + +++     Wr+++ +aGF pv+ +++a++qa++ll+kv+++g+rve++ gsl+l+W++ +LvsvS
  ONIVA10G20420.1 561 PDTASKIERYLIHPAIEQCVVARHRAaSAMDKAPPPPWRAAFAAAGFAPVQATTFAESQAEALLSKVHVRGFRVEKRAGSLCLYWQRGELVSVS 654
                      8*****************98888776589999999*********************************************************** PP

             GRAS 372 aWr 374
                      aWr
  ONIVA10G20420.1 655 AWR 657
                      **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MPFGGSAREG HAGTLLQHHL IHGVGLAAAG KLVSSSSAAA AAAGAGGFWE PRSVLDHRHS  60
PSPSPPTSAS TLSSPLADVA ALAGANAKNV SVSPPPPGWG TGGGGGGGEE VVAAKEEWVH  120
QLTPLDMGLG AGEGWDAAGN VLSDAAAAAT SGMAPDNTFL RWIIGGGEDA SAAMAGVMDP  180
PVLELDHGGG GGAAPAAFGP FAPPPAMEDT KPVVPFAAGH PPPNFLLQHH HHHPQPHAAF  240
FGAHHPSFDA APPPSKRHHP MAAAPAPKLP PFPAGGFVPA LKPKAEAAND EAAAAVEQLA  300
EAAKLAEAGD AFGAREILAR LNYRLPAAPT AGTPLLRSAF YFKEALRLAL SPTGDAPAPS  360
ASTPYDVVVK LGAYKAFSEV SPVLQFAHLT CVQAVLDELG GAGCIHVLDF DIGMGEQWAS  420
LMQELAQLRP AAALKVTALV SPASHHPLEL QLIHENLSGF AAELGVFFHF TVFNIDTLDP  480
AELLAIATAG DAVAVHLPVG PAHAAATPAV LRLVKRLGAK VVVSVDRGCD RSDLPFAAHL  540
FHSFHSAVYL LESIDAVGTD PDTASKIERY LIHPAIEQCV VARHRAASAM DKAPPPPWRA  600
AFAAAGFAPV QATTFAESQA EALLSKVHVR GFRVEKRAGS LCLYWQRGEL VSVSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-81GRAS family protein