PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G18960.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 782aa    MW: 88977 Da    PI: 5.9503
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G18960.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.41.8e-913606961338
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+avs ++++la+ +L+ ++++asp+gd  qRla +++  L  rl++++s++y+++ +++ +   +++ l+++++   ++P+l+ s
  ONIVA10G18960.1 360 LRTLLINCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN---VKDILKVFHVCLSTCPFLRAS 450
                      6789*********************************************************999998887...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h   N++I++  +g+ +vHiiDf+i  G+QWp+L+++La+ ++gpp+lRiTg++ pesg     + +++g rLa++A+++++pfe++ + ++++
  ONIVA10G18960.1 451 HYFSNRTIVDVSKGKPQVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSNNIGLRLADYAKTFNIPFEYQHISSNKW 544
                      **********************************************************999999************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e+l++e+++++++E+l+Vn++++++ l de+ s++s+r++vL++++ ++Pkv+v    + +++ + Fl+rf e +++y +lfd+l++++pr++e
  ONIVA10G18960.1 545 EALSPEDFNIEKDEVLIVNCIYRMKDLGDETISINSARSRVLNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPRDNE 638
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                      +r+ +Er + +    nv+aceg er+er e+++kW+ r  +aG+ ++pl+  ++ + +
  ONIVA10G18960.1 639 TRMIIERDIYQYIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQ 696
                      ********999999***********************************998887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    
MSASQNLHRH PEFCVIPATA CSREPGLNRI VIRSNMGSDD NKRFDDFHVI TNGPGSDAYS  60
NEASINLDSY IAPSTSFCSK IYNPQLYVEK GNGTTDWCQT SGGDYPEKSS INSDITLSYI  120
DKILMQEDID DRGNEDTALQ AMEEPFYELL GEKYPAFPQQ QPLCVCDHLQ NLSANTDKSN  180
GHACNTWSVT RMTNISSSMN SNGNFQGFQF PWSLSSITRE TEQFTHHSNR MVVGLKVDGL  240
SISEKPSQDN CSLQIDAHYM RKHPLFEVHD RKSYPCIEDL DLLEGRSNKQ YAIYYDEPIQ  300
DEMFDNVLLC SDHKPLDEGV SLSRAMTNNS SKSSQIGQGK TSARRKTTGK RIQKRDVVDL  360
RTLLINCAQA VSVSNHSLAS DILKIIRHHA SPTGDDSQRL ALCLAYCLDV RLTGTGSQIY  420
HKFITKRRNV KDILKVFHVC LSTCPFLRAS HYFSNRTIVD VSKGKPQVHI IDFGICFGFQ  480
WPSLFEELAK IEDGPPKLRI TGIELPESGF RPYARSNNIG LRLADYAKTF NIPFEYQHIS  540
SNKWEALSPE DFNIEKDEVL IVNCIYRMKD LGDETISINS ARSRVLNTIR MMKPKVFVQG  600
VLNGSYGVPF FLTRFKEVMY HYNSLFDMLD KNIPRDNETR MIIERDIYQY IMLNVIACEG  660
PERIERPESY KKWKVRNLKA GLVQLPLNPA IVRETQDMSS DQASIRLCLV CYGNIYDSYH  720
VSGDTREVSC DTYQVSDDSY HVSGDTREIS CDTYQVSDDF YHVSGDTYEI SDDTYRISGD  780
FY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-128GRAS family protein