PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G17960.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 360aa    MW: 38092 Da    PI: 10.2345
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G17960.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox171e-05303331432
                      -SS--HHHHHHHHHHHHHSSS--HHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeeree 32 
                        ++t++q+e+Le++++++++ps ++r++
  ONIVA10G17960.1 303 YVQYTPDQVEALERVYAECPKPSFSRRQQ 331
                      6789*********************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MSVKEPTDGH AVDPEKSSES SVGVCSKELS ANPSPTRNIS LPNPPPGQSA IPIHQANPCG  60
LLPAGGKDGA GVYKDDGARG RHASCADLLY RDGLLDLEAA PARAAAGAPL LLLHPLVVTA  120
AVAAGGGQIR RPTPADPPSS PLPSLVAAVA RVPTLAAEPA ARLPPMPFPH GGVGPAACAG  180
LPYVFPRRRV ASPSSPPQLP NRSPLNSRPL LSTRNTMTVA AEVDASPDGE ERRRQACNLT  240
TIYRFLPSFS FFFLSFFRGE GGNFGGGGGR RGGWRQRWRC PMRSGSGSDG GGYDKAGMDS  300
GKYVQYTPDQ VEALERVYAE CPKPSFSRRQ QSPTSSPSRR SRSGSQNRSL QMFDKKRMKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.17e-10HD-ZIP family protein