PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G11850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 24568.6 Da PI: 6.3935 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.2 | 2.1e-08 | 6 | 39 | 10 | 43 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43 t+ k ++ ++ A ELS+LC+++va++ ++ ONIVA10G11850.1 6 DATYGKMQESLMEEARELSILCGVDVALLCAGGP 39 57999************************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MKMEEDATYG KMQESLMEEA RELSILCGVD VALLCAGGPG TGDGDGGGGG VGVGGGRSRL 60 LHQYGGGGAG AARVHGRGDG GRDREAEGAA LGLLDDGNAV NGDGGGPDLL HIPIQPGAPD 120 SVVVPVISHA QPIASSTGAD FADAPNGFLA MDVGGSLIKS ATTRRSARPM GSSSGTPTMA 180 NLDQIHYLVG GSAFSIDALE SPTLLVRCKT LRIAIQFMLP LRHGRFRANV PSNHRRTETK 240 S |
Link Out ? help Back to Top | |
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Ensembl | ONIVA10G11850.1 |