PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G09540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 475aa MW: 50675.8 Da PI: 7.8162

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G09540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H ONIVA10G09540.1 105 FVCEVCNKGFQRDQNLQLHRRGH 127 89*******************88 PP
2	zf-C2H2	13	0.00031	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H +++ ONIVA10G09540.1 190 WRCERCGKRYAVHSDWKAHVKNC 212 58******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MLLSDLSSDQ EATGSNSHGG GGGDRMVVGS HGAAHVVLSN LFLPPAAAAA ATMLLPAAPV 60 MVRPAAMAAA QEPRAKKKRS LPGNPDPEAE VIALSPRALV ATNRFVCEVC NKGFQRDQNL 120 QLHRRGHNLP WKLRHRAAAV SAVTTAAPAP RKRVYVCPEP TCVHHDPARA LGDLTGIKKH 180 FSRKHGEKRW RCERCGKRYA VHSDWKAHVK NCGTREYRCD CGILFSRKDS LLTHRAFCDA 240 LAEESARLLA AANNSSSITT TTCNNSNISS SSNNNNINSI SNSNNLLITS SSSSPPLFLP 300 FSTTPAENPN PNQLLFLQQH QAAHHQLLLP QFQQPPSSPP AYFDHLAFGG GGGVITSSSC 360 NDDNSSIAGD VMVAAGGDSV SFGLTSEGSV TMHAGDVGRR RLTRDFLGVD HDAGEVDELE 420 LDELPADLST TAAACQGCNF AAATTVACCA TDFTTGSRQY LGRLPPVNET WSHNF

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MLLSDLSSDQ EATGSNSHGG GGGDRMVVGS HGAAHVVLSN LFLPPAAAAA ATMLLPAAPV  60
MVRPAAMAAA QEPRAKKKRS LPGNPDPEAE VIALSPRALV ATNRFVCEVC NKGFQRDQNL  120
QLHRRGHNLP WKLRHRAAAV SAVTTAAPAP RKRVYVCPEP TCVHHDPARA LGDLTGIKKH  180
FSRKHGEKRW RCERCGKRYA VHSDWKAHVK NCGTREYRCD CGILFSRKDS LLTHRAFCDA  240
LAEESARLLA AANNSSSITT TTCNNSNISS SSNNNNINSI SNSNNLLITS SSSSPPLFLP  300
FSTTPAENPN PNQLLFLQQH QAAHHQLLLP QFQQPPSSPP AYFDHLAFGG GGGVITSSSC  360
NDDNSSIAGD VMVAAGGDSV SFGLTSEGSV TMHAGDVGRR RLTRDFLGVD HDAGEVDELE  420
LDELPADLST TAAACQGCNF AAATTVACCA TDFTTGSRQY LGRLPPVNET WSHNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	3e-90	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA10G09540.1