PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G20570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 16975.7 Da PI: 7.1961 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H ONIVA09G20570.1 49 FSCNYCHRKFFSSQALGGHQNAH 71 89*****************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MESEPAQVHG GVNLNLRVLE TSPRRRSANG GGGGAAPAAA AAVDPREAFS CNYCHRKFFS 60 SQALGGHQNA HKLERTLAKR SRDIVMTAAV SPSPSSSSSS RAVHGFDGVA GGFFWTAPPY 120 GHAAAAEAAE EDHDVAPPAP PPADGGCGGG RYGRNGEEID LSLKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 3e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA09G20570.1 |