PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G20340.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 537aa MW: 55095.3 Da PI: 9.5117

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G20340.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H ONIVA09G20340.1 78 FVCEVCNKGFQREQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	12.5	0.00043	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k++ +s+ k H +t+ ONIVA09G20340.1 154 WRCDKCSKRYAVQSDWKAHSKTC 176 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MAAASSAPFF GLGDTQMPPP QNPTNPALHH HPNPSPAPVA AAAPAPKKKR NQPGNPSKYP 60 DAEVIALSPR TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKEARRRVYL 120 CPEPSCVHHD PSRALGDLTG IKKHYCRKHG EKKWRCDKCS KRYAVQSDWK AHSKTCGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAQENA RIPPIGAGVY GGAGNMTLGL TGMAAPQLPA 240 GFPDQAGQPS ASAGDVLRLG GGSNGASQFD HLMASSSGSS MFRSQGSSSS SFYLANGAAH 300 HAPAQDFGPE DGQSQAGQGS LLHGKPAAFH DLMQLPVQHQ QSGNGNLLNL GFFSGSNGGV 360 DQFNGGAGNG GQGSIVTSSG LAGNHGGGGG GFPSLYNSSE PAGTLPQMSA TALLQKAAQM 420 GATTSSYNAG GAGGASSLLR GASSHGISAG EGPANERASY QNLIMGSMAS GGGGAGFAGS 480 FSGASGFGGA VDDGKLSTRD FLGVGVVQGI SGSAAMGPPR HGAAGLHVGS LDPANMN

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MAAASSAPFF GLGDTQMPPP QNPTNPALHH HPNPSPAPVA AAAPAPKKKR NQPGNPSKYP  60
DAEVIALSPR TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKEARRRVYL  120
CPEPSCVHHD PSRALGDLTG IKKHYCRKHG EKKWRCDKCS KRYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAQENA RIPPIGAGVY GGAGNMTLGL TGMAAPQLPA  240
GFPDQAGQPS ASAGDVLRLG GGSNGASQFD HLMASSSGSS MFRSQGSSSS SFYLANGAAH  300
HAPAQDFGPE DGQSQAGQGS LLHGKPAAFH DLMQLPVQHQ QSGNGNLLNL GFFSGSNGGV  360
DQFNGGAGNG GQGSIVTSSG LAGNHGGGGG GFPSLYNSSE PAGTLPQMSA TALLQKAAQM  420
GATTSSYNAG GAGGASSLLR GASSHGISAG EGPANERASY QNLIMGSMAS GGGGAGFAGS  480
FSGASGFGGA VDDGKLSTRD FLGVGVVQGI SGSAAMGPPR HGAAGLHVGS LDPANMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.1	1e-110	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G20340.1