PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G18260.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 201aa    MW: 21500.6 Da    PI: 4.8381
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G18260.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-093171444
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44
                     + +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rq 
  ONIVA09G18260.1 31 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQL 71
                     456***********************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MDGEEDSEWM MMDVGGKGGK GGGGGGAADR KKRFSEEQIK SLESMFATQT KLEPRQKLQL  60
ARELGLQPRQ LEKLAEMLQE PRGKYGDNAG DDARSGGVAG MKKEEFVGAG GASTLYSSAE  120
GGGTTTTTTA KLMPHFGSDD VDAGLFLRPS SQHHPPPPHA GAGFTSSEPA ADHQSFNFHS  180
SWPSSTEQTC SSTPWWEFES E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11523GGKGGKGGG
21826GGKGGKGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-15HD-ZIP family protein