PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G18120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 870aa MW: 91535.1 Da PI: 6.03 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.1e-21 | 122 | 177 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k ONIVA09G18120.1 122 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 177 688999***********************************************999 PP | |||||||
2 | START | 177.5 | 7.8e-56 | 347 | 577 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela++a++elvk a+ +ep+W s e +n+de+ + f++ + + +ea r+sg+ + +++lv +l+d + +W+e+++ +a+t ONIVA09G18120.1 347 ELALAAMDELVKVAQMDEPLWLPSLdggfETLNYDEYHRAFARVVGqcpagYVSEATRESGIAIISSVDLVDSLMDAP-RWSEMFPcvvaRAST 439 5899*************************************8866699******************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--........-TTSEE-EESSEEEEEEEECTCE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.......sssvvRaellpSgiliepksngh 161 ++ issg g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd p + sss++ ++llp+g++++++ ng+ ONIVA09G18120.1 440 TDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDQnggggssSSSYMGCRLLPTGCIVQDMNNGY 533 *********************************************************988877667788889********************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 skvtwv h+++++ h+l+r+l++sg+a ga++w+a lqrqc+ ONIVA09G18120.1 534 SKVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQ 577 *******************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 870 aa Download sequence |
MSFGGMFDGA GSGVFSYDAG GGGGGGVHNS RLLPTPPVPK PGGGFAAPGL SLGLQTMDGS 60 QLGDVNRSLA MMGNGGSGSG GDGDSLGRGR EEENDSRSGS DNLDGASGDE LDPDNSNPRK 120 KKKRYHRHTP QQIQELEAVF KECPHPDEKQ RMELSRRLNL ESRQVKFWFQ NRRTQMKTQI 180 ERHENALLRQ ENDKLRAENM TIREAMRNPM CASCGGAAVL GEVSLEEQHL RIENARLKDE 240 LDRVCALAGK FLGRPISSIS SPGPPSLQAC SGLELGVGSN GGFGLGALGA SAAMQSIPDL 300 MGGSSGLTGG PVGSAAMRLP AGIGGLDGAM HAAAADGGAI DRAVLLELAL AAMDELVKVA 360 QMDEPLWLPS LDGGFETLNY DEYHRAFARV VGQCPAGYVS EATRESGIAI ISSVDLVDSL 420 MDAPRWSEMF PCVVARASTT DIISSGMGGT RSGSIQLMHA ELQVLSPLVP IREVVFLRFC 480 KQHAEGLWAV VDVSVDAVLR PDQNGGGGSS SSSYMGCRLL PTGCIVQDMN NGYSKVTWVV 540 HAEYDETAAH QLYRPLLRSG QALGARRWLA SLQRQCQYLA ILCSNSLPAR DHAAITPVGR 600 RSMLKLAQRM TDNFCAGVCA SAAQKWRRLD EWRGEGGGGG GGGGGDGEDK VRMMARHSVG 660 APGEPPGVVL SATTSVRLPG TLPQRVFDYL RDEQRRGDWD ILANGEAMQE MDHIAKGQHH 720 GNAVSLLRPN ATSGNQNNML ILQETCTDSS GSLVVYAPVD VQSMHVVMNG GDSAYVSLLP 780 SGFAILPDGH NNGASPSPAE VGSGASPNSA AGGGGGSNNT GSLVTVAFQI LVNNLPTAKL 840 TVESVDTVSN LLSCTIQKIK SALQASIISP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 124 | RKKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA09G18120.1 |