PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G15400.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 400aa MW: 41634.1 Da PI: 8.5722

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G15400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.2	1.9e-37	73	156	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.......SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.......rfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCs rfh+l efD+ek+sCrrrLa+hnerrrk++ ONIVA09G15400.1 73 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSrcsvhmvRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 156 6*******************************************955555555*************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV 60 AAAAAPPPPP PPRCQVEGCG VDLSGVKPYY CRHKVCYMHA KEPIVVVAGL EQRFCQQCSR 120 CSVHMVRFHQ LPEFDQEKKS CRRRLAGHNE RRRKPTPGPL SSRYGRLAAS FHEEPGRSRS 180 FVVDFSYPRV PSSVRDAWPA IQPSDRMSGS IQWQGGHELH PHRSAVAGYS DHHAFSSHGG 240 SAAGAPMLHH PAFELTSGGC LAGVATDSSC ALSLLSTQPW DTTQSTSSHN RSPPMSSTAS 300 AFGGGNNPVS PSVMASNYMA ASPGWNSSSR GHDGARNVHL PPPHGVVLNE VPPGSVHHGH 360 FSGELELALQ GGAPSNRPEA EHGSGSGAFS HSTNAMNWSL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV  60
AAAAAPPPPP PPRCQVEGCG VDLSGVKPYY CRHKVCYMHA KEPIVVVAGL EQRFCQQCSR  120
CSVHMVRFHQ LPEFDQEKKS CRRRLAGHNE RRRKPTPGPL SSRYGRLAAS FHEEPGRSRS  180
FVVDFSYPRV PSSVRDAWPA IQPSDRMSGS IQWQGGHELH PHRSAVAGYS DHHAFSSHGG  240
SAAGAPMLHH PAFELTSGGC LAGVATDSSC ALSLLSTQPW DTTQSTSSHN RSPPMSSTAS  300
AFGGGNNPVS PSVMASNYMA ASPGWNSSSR GHDGARNVHL PPPHGVVLNE VPPGSVHHGH  360
FSGELELALQ GGAPSNRPEA EHGSGSGAFS HSTNAMNWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-41	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G15400.1