PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G13320.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 366aa MW: 38224.4 Da PI: 5.9477

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G13320.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	179	233	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k ONIVA09G13320.1 179 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 233 788899***********************************************98 PP
2	HD-ZIP_I/II	127.1	7.7e-41	179	269	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk ONIVA09G13320.1 179 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 269 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MELGLSLGEA MADAGRELVL GLGMGRREEA AEAGRRDHEV RRELEFGSMS SRCGGSSPEP 60 TVRLTLLPMV PGLGLPWPPP PPPPSSESSE CGDGHLEAST RGFDVNRPPS SGGGGGGEEE 120 QDDVAGAALS SSPNNSAGSF PMDDFSGHGL GGNDAAPGGG GGDRSCSRAS DEDDGGSARK 180 KLRLSKEQSA FLEESFKEHS TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD 240 CEYLKRCCET LTEENRRLQK ELAELRALKT VHPFYMHLPA TTLSMCPSCE RVASNSAPAT 300 ASSAATSSTA APPAAPSSGG IAATSSSSAA AAAAPDHRPS SFAALFSSPR GFPLSVAPQA 360 QPPTSS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MELGLSLGEA MADAGRELVL GLGMGRREEA AEAGRRDHEV RRELEFGSMS SRCGGSSPEP  60
TVRLTLLPMV PGLGLPWPPP PPPPSSESSE CGDGHLEAST RGFDVNRPPS SGGGGGGEEE  120
QDDVAGAALS SSPNNSAGSF PMDDFSGHGL GGNDAAPGGG GGDRSCSRAS DEDDGGSARK  180
KLRLSKEQSA FLEESFKEHS TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD  240
CEYLKRCCET LTEENRRLQK ELAELRALKT VHPFYMHLPA TTLSMCPSCE RVASNSAPAT  300
ASSAATSSTA APPAAPSSGG IAATSSSSAA AAAAPDHRPS SFAALFSSPR GFPLSVAPQA  360
QPPTSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	236	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-63	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G13320.1