PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G01330.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 238aa MW: 25969.2 Da PI: 6.954

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G01330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.1e-38	30	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +k+l +lp ++r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a+ ONIVA09G01330.1 30 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNASKILMHLPVSDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQAQ 123 7***********************89************************************************************** PP DUF260 94 lallkee 100 l++lk++ ONIVA09G01330.1 124 LESLKAQ 130 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MQYDPYHNQQ GARIRPTTAS RTRMTGLGSP CGACKFLRRK CVKGCVFAPY FCHEQGAAHF 60 AAIHKVFGAS NASKILMHLP VSDRCEAAVT MSYEAQARLR DPIYGCVAHI FSLQQQVVSL 120 QAQLESLKAQ ATQGYGDGCS ISSPQNDSCG NMLTSIVQDE QQFVGPTMAS NSSVKNENHS 180 YIANGHLAPM SAQSSQGFEA ELCMAEYSNT NPCCSVQGNW YHDMEDLQSV AFAYLNQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-54	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G01330.1