PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G24870.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 483aa MW: 50879.6 Da PI: 5.9162

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G24870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.6e-06	14	55	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++ C+ ++e + l+C+ + lC C + H H ONIVA08G24870.1 14 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 55 7899*****9****************999545555555 PP
2	CCT	43	1.6e-15	445	473	16	44
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 ++eK+irYesRK +A++R+RvKGrFvk++ ONIVA08G24870.1 445 RYEKHIRYESRKLRADTRKRVKGRFVKSN 473 79************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL 60 CAACAARPAA ARVASASAPA FLCADCDTGC GGDHGAALRV PVEGFSGCPA AAELAASWGL 120 DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG RRLKGEALGH 180 QLAEMARREA ETAHPHTQPH SDLSPRTPRR TSAAASGRLQ EKQAPPPLPH AAATAAAPEA 240 PLPYTSLLMM APANCTELME NNRVGDEDEN VLWESTAPSV PPTQIWDFNL GKSRDHNENS 300 ALEVGFGSNN GGFMIKSYND MLKEISSGTT KDLEDIYDSR YCAAAEDIMS TNVCQLSSKN 360 PSTGSNKRKV SSCASTIDGP TTSTSHVPAA SGALGGSSND RGSALPKEIS FCDQTVVPTG 420 ADQRPCTIKI DSETLAQNRD SAMQRYEKHI RYESRKLRAD TRKRVKGRFV KSNGAPDDVS 480 NGG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL  60
CAACAARPAA ARVASASAPA FLCADCDTGC GGDHGAALRV PVEGFSGCPA AAELAASWGL  120
DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG RRLKGEALGH  180
QLAEMARREA ETAHPHTQPH SDLSPRTPRR TSAAASGRLQ EKQAPPPLPH AAATAAAPEA  240
PLPYTSLLMM APANCTELME NNRVGDEDEN VLWESTAPSV PPTQIWDFNL GKSRDHNENS  300
ALEVGFGSNN GGFMIKSYND MLKEISSGTT KDLEDIYDSR YCAAAEDIMS TNVCQLSSKN  360
PSTGSNKRKV SSCASTIDGP TTSTSHVPAA SGALGGSSND RGSALPKEIS FCDQTVVPTG  420
ADQRPCTIKI DSETLAQNRD SAMQRYEKHI RYESRKLRAD TRKRVKGRFV KSNGAPDDVS  480
NGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-28	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G24870.1