PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G24570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20092.1 Da PI: 10.4238 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.2 | 3.8e-27 | 17 | 66 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s ONIVA08G24570.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66 8***********************************************86 PP | |||||||
2 | K-box | 17.1 | 2.3e-07 | 121 | 164 | 42 | 85 |
K-box 42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 ++++L++ eL+ Le+++ ++l+ +++k + + + + ++ kk k ONIVA08G24570.1 121 NVNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 164 5799********************99988777777777766665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR 60 LYEFASSTSS IDTIFGRYWD LLDTTIDLNI EARESRLRQK ERSDDPVPKI NHITQCVLES 120 NVNELNIAEL RGLEEAMTNA LTVVKNKLMM KVASVLPQSE KKRKSCSISE PRSGVSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 13 | RRRKRGKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-27 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA08G24570.1 |