PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G24560.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 279aa    MW: 32233.1 Da    PI: 9.9307
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G24560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-313383151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  ONIVA08G24560.1 33 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 83
                     79***********************************************96 PP
2K-box86.74.7e-291082068100
            K-box   8 sleeakaeslqqelakLkkeienLqreqRh......llGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                      + e+++ + +++e+ kLk+++enLqr+qR+      llGedL+sL +keL++Le+qL++slk++R++++++l++q+ elq+ke++++e+n++Lr
  ONIVA08G24560.1 108 NRESEQLKASRNEYLKLKARVENLQRTQRQliawinLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLR 201
                      467888999********************733333368******************************************************** PP

            K-box  96 kklee 100
                      +klee
  ONIVA08G24560.1 202 RKLEE 206
                      **987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MAEKKKKKKK PQSLLVLTNW RSIGMGRGRV ELKRIENKIN RQVTFAKRRN GLLKKAYELS  60
VLCDAEVALI IFSNRGKLYE FCSTQSMTKT LEKYQKCSYA GPETAVQNRE SEQLKASRNE  120
YLKLKARVEN LQRTQRQLIA WINLLGEDLD SLGIKELESL EKQLDSSLKH VRTTRTKHLV  180
DQLTELQRKE QMVSEANRCL RRKLEESNHV RGQQVWEQGC NLIGYERQPE VQQPLHGGNG  240
FFHPLDAAGE PTLQIGYPAE HHEAMNSACM NTYMPPWLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311EKKKKKKKP
2410KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-89MIKC_MADS family protein