PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G23730.4

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ARF

Protein Properties

Length: 1083aa MW: 120159 Da PI: 6.7205

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G23730.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.5e-22	99	200	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ ONIVA08G23730.4 99 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 188 99***************************954.4444.49**********************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++l+++++r+ ONIVA08G23730.4 189 AKQQLLLGIRRA 200 677789999997 PP
2	Auxin_resp	117.3	1.3e-38	225	308	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++ ONIVA08G23730.4 225 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 308 79********************************9******************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1083 aa Download sequence
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQADPDTD 60 EVYARMTLQP VSNVTQCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA 120 AERIFPRLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG 180 DSVLFIRDAK QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTIYYN 240 PRASTSEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK 300 TSHWRNIQVA WDEAAPTERR TRVSLWEIEP IIAPFFIYPS PLFTAKRPRL PGMTDDETEM 360 DGLLKRAMPW VGEEICKKDL NIQNSVVPGL NLAQWMNMQH SSSLPGTVVQ PELLNSLSGK 420 PVQNLAAADL SRQISFHPQF LQQNNIQFNT ALVPQQNQQT EQLAKVIPTP NQLGSVIIPQ 480 KVVQDCNSEQ RQHVVTQPVQ GSQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ 540 LQQTQPSVQS HTVLQGGLQQ IQLLQQQQPH VQHQQIPQQL HHHQQQTQQL QPVQQVQQSV 600 QEHQQIKIQP VHVSMDASMN TQVADHQMKL QLLKALQPQQ PLISEQQKML LDLQQQVINS 660 QSAPQQCVQV TNQAISLHNS NTIQYPTQQK VQSHQVQDLT GNVIPNSKSD IATSMGASSL 720 HVAGGRQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE 780 QDTKPYQNVK QTVMIPKTTE QRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN 840 FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLLA NDIGTDKYMD 900 QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA 960 HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH 1020 EKDVLLVGDD PWEDFVKCVR CIRILSPQEE MQMRLVGDFG DSFLPNQACS SSDGGHPWRI 1080 TGD

Sequence ? help Back to Top

Protein Sequence Length: 1083 aa Download sequence

MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQADPDTD  60
EVYARMTLQP VSNVTQCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA  120
AERIFPRLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG  180
DSVLFIRDAK QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTIYYN  240
PRASTSEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK  300
TSHWRNIQVA WDEAAPTERR TRVSLWEIEP IIAPFFIYPS PLFTAKRPRL PGMTDDETEM  360
DGLLKRAMPW VGEEICKKDL NIQNSVVPGL NLAQWMNMQH SSSLPGTVVQ PELLNSLSGK  420
PVQNLAAADL SRQISFHPQF LQQNNIQFNT ALVPQQNQQT EQLAKVIPTP NQLGSVIIPQ  480
KVVQDCNSEQ RQHVVTQPVQ GSQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ  540
LQQTQPSVQS HTVLQGGLQQ IQLLQQQQPH VQHQQIPQQL HHHQQQTQQL QPVQQVQQSV  600
QEHQQIKIQP VHVSMDASMN TQVADHQMKL QLLKALQPQQ PLISEQQKML LDLQQQVINS  660
QSAPQQCVQV TNQAISLHNS NTIQYPTQQK VQSHQVQDLT GNVIPNSKSD IATSMGASSL  720
HVAGGRQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE  780
QDTKPYQNVK QTVMIPKTTE QRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN  840
FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLLA NDIGTDKYMD  900
QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA  960
HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH  1020
EKDVLLVGDD PWEDFVKCVR CIRILSPQEE MQMRLVGDFG DSFLPNQACS SSDGGHPWRI  1080
TGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G23730.4