PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G23730.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ARF

Protein Properties

Length: 1092aa MW: 120834 Da PI: 6.8331

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G23730.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.5e-22	132	233	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ ONIVA08G23730.2 132 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 221 99***************************954.4444.49**********************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++l+++++r+ ONIVA08G23730.2 222 AKQQLLLGIRRA 233 677789999997 PP
2	Auxin_resp	86	7.6e-29	258	335	1	79
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt+++ + r + S W ONIVA08G23730.2 258 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITAAPT--ERRTRVSLW 335 79********************************9*************************99876..334555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR 60 KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL 120 ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN 180 VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL 240 SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG 300 MRFRMMFETE ESGTRRYMGT ITAAPTERRT RVSLWEIEPI IAPFFIYPSP LFTAKRPRLP 360 GMTDDETEMD GLLKRAMPWV GEEICKKDLN IQNSVVPGLN LAQWMNMQHS SSLPGTVVQP 420 ELLNSLSGKP VQNLAAADLS RQISFHPQFL QQNNIQFNTA LVPQQNQQTE QLAKVIPTPN 480 QLGSVIIPQK VVQDCNSEQR QHVVTQPVQG SQPNINIPQP QLVVQAQLQQ PQVILQAQLQ 540 QPQVVVQAQL QQTQPSVQSH TVLQGGLQQI QLLQQQQPHV QHQQIPQQLH HHQQQTQQLQ 600 PVQQVQQSVQ EHQQIKIQPV HVSMDASMNT QVADHQMKLQ LLKALQPQQP LISEQQKMLL 660 DLQQQVINSQ SAPQQCVQVT NQAISLHNSN TIQYPTQQKV QSHQVQDLTG NVIPNSKSDI 720 ATSMGASSLH VAGGRQLLKT DDVPSTSTSP STNSNPVLLQ SIPSSSKNQS LTTAGKTSQS 780 SVVLGPTIEQ DTKPYQNVKQ TVMIPKTTEQ RPATGQDCIN NNPQMDYLDT SSSATSVCLS 840 QADGSLQQNF PPSSFHQHHL LKDTVPDSEF EVTDPRNNLL FGVNIDGQLG LPLNADLLAN 900 DIGTDKYMDQ LPGNGISNFI SSKDSQQELS SSMISHSFGV ADMAFNSIDS AINDTPFLNR 960 NSRSAAGPAH QRMRTYTKVH KRGAVGRSID INRYSGYDEL KHDVARMFGI EGQLGDQNRV 1020 GWKLVYEDHE KDVLLVGDDP WEDFVKCVRC IRILSPQEEM QMRLVGDFGD SFLPNQACSS 1080 SDGGHPWRIT GD

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence

MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR  60
KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL  120
ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITAAPTERRT RVSLWEIEPI IAPFFIYPSP LFTAKRPRLP  360
GMTDDETEMD GLLKRAMPWV GEEICKKDLN IQNSVVPGLN LAQWMNMQHS SSLPGTVVQP  420
ELLNSLSGKP VQNLAAADLS RQISFHPQFL QQNNIQFNTA LVPQQNQQTE QLAKVIPTPN  480
QLGSVIIPQK VVQDCNSEQR QHVVTQPVQG SQPNINIPQP QLVVQAQLQQ PQVILQAQLQ  540
QPQVVVQAQL QQTQPSVQSH TVLQGGLQQI QLLQQQQPHV QHQQIPQQLH HHQQQTQQLQ  600
PVQQVQQSVQ EHQQIKIQPV HVSMDASMNT QVADHQMKLQ LLKALQPQQP LISEQQKMLL  660
DLQQQVINSQ SAPQQCVQVT NQAISLHNSN TIQYPTQQKV QSHQVQDLTG NVIPNSKSDI  720
ATSMGASSLH VAGGRQLLKT DDVPSTSTSP STNSNPVLLQ SIPSSSKNQS LTTAGKTSQS  780
SVVLGPTIEQ DTKPYQNVKQ TVMIPKTTEQ RPATGQDCIN NNPQMDYLDT SSSATSVCLS  840
QADGSLQQNF PPSSFHQHHL LKDTVPDSEF EVTDPRNNLL FGVNIDGQLG LPLNADLLAN  900
DIGTDKYMDQ LPGNGISNFI SSKDSQQELS SSMISHSFGV ADMAFNSIDS AINDTPFLNR  960
NSRSAAGPAH QRMRTYTKVH KRGAVGRSID INRYSGYDEL KHDVARMFGI EGQLGDQNRV  1020
GWKLVYEDHE KDVLLVGDDP WEDFVKCVRC IRILSPQEEM QMRLVGDFGD SFLPNQACSS  1080
SDGGHPWRIT GD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G23730.2