PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G23730.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 1116aa    MW: 123725 Da    PI: 6.7948
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G23730.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-22132233199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  ONIVA08G23730.1 132 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 221
                      99*****************************954.4444.49************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       +++l+++++r+
  ONIVA08G23730.1 222 AKQQLLLGIRRA 233
                      677789999997 PP
2Auxin_resp117.21.4e-38258341183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++
  ONIVA08G23730.1 258 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 341
                      79**********************************9********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1116 aa     Download sequence    
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR  60
KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL  120
ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE  360
IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV  420
PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ  480
FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN  540
IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ  600
QPHVQHQQIP QQLHHHQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ  660
MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT  720
QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGRQ LLKTDDVPST STSPSTNSNP  780
VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEQRPATGQ  840
DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR  900
NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH  960
SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG  1020
YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP  1080
QEEMQMRLVG DFGDSFLPNQ ACSSSDGGHP WRITGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein