PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G21960.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 435aa MW: 46497 Da PI: 6.3793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G21960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	265	284	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ ONIVA08G21960.1 265 FSCPVCFKTFNRYNNMQMHM 284 89*****************9 PP
2	zf-C2H2	12.5	0.00045	351	371	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ ONIVA08G21960.1 351 CRKCGKAFAVKGDWRTHEKNC 371 *****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AHLPPPLPPP YAALYPTAGG VGVGVGAHHH 60 HQYPPAAFFH PPPVHQQHQA PPSPPLREAL PLLSLSPTPA RRGGVVDAAA DSDSDDDDDG 120 DCCYHHLQDQ EGAAAGSTAT PAAAAARAPL FADLNCIPTC CGDDNDGGDP MDVEVAGTTA 180 DIDAAVALRI GLPAGGTEAD LLSGLTGTGV EHEEEEEDCK VDGGGSGGDD EVVPLGFSST 240 PIGKLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG 300 VQPTAMLRLP CYCCAAGCRN NIDHPRARPL KDFRTLQTHY KRKHGLKPFL CRKCGKAFAV 360 KGDWRTHEKN CGKLWYCLCG SEFKHKRSLK DHARAFGHAH TALDADDDDG AVSDADAVVR 420 PSSSMAASSL QPPPR

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AHLPPPLPPP YAALYPTAGG VGVGVGAHHH  60
HQYPPAAFFH PPPVHQQHQA PPSPPLREAL PLLSLSPTPA RRGGVVDAAA DSDSDDDDDG  120
DCCYHHLQDQ EGAAAGSTAT PAAAAARAPL FADLNCIPTC CGDDNDGGDP MDVEVAGTTA  180
DIDAAVALRI GLPAGGTEAD LLSGLTGTGV EHEEEEEDCK VDGGGSGGDD EVVPLGFSST  240
PIGKLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG  300
VQPTAMLRLP CYCCAAGCRN NIDHPRARPL KDFRTLQTHY KRKHGLKPFL CRKCGKAFAV  360
KGDWRTHEKN CGKLWYCLCG SEFKHKRSLK DHARAFGHAH TALDADDDDG AVSDADAVVR  420
PSSSMAASSL QPPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-109	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G21960.1