PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G20930.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 582aa MW: 65934.9 Da PI: 5.8818

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G20930.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	517	543	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C+++ rtG+C+ Gd C +aH++ ONIVA08G20930.1 517 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 543 79***********************97 PP
2	zf-CCCH	32.3	1.6e-10	555	580	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+te+Cr+++++ C+yGd+C++ H+ ONIVA08G20930.1 555 YRTEPCRYWLAGKGCWYGDKCRYKHS 580 89*******99**********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI 60 EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV 120 FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQPVGCDVSP MALAEAAVSS DDFERHGRNK 180 VVIDEFGYED LLRRRHTGHE SQNDADDAEQ HGREVREGEY EDLILMRHRD TSHELLQDDA 240 RRRRADAEAE QQGGDGEVRD EYEDYLCRQL GAVYSGPDQI YEHDMRGPEP AHSPNTPDQI 300 YVPCERMLPY PSNCDNAEDR IHMACLALKN LVKDMEGIYS PRGTLWQYLE DVISLAHALF 360 LENTKLHRFT DQASHQDLPL QPPQGFPFQQ QPQHDGYQQP GVPFQQPQQG GYYGHGQGIM 420 FQRGGYLQDV PFQHWQWQQG GYGQGFMFPQ AQHQGGYGQG FLSEQPLPGD PSFMNMQAPY 480 YGDGGVLFQK PQHYHHGHVP SEKGAIQAKG KQKMREPKTV MCPDWCRTGH CSSGDGCEYA 540 HSQDELRVID AGPKYRTEPC RYWLAGKGCW YGDKCRYKHS TD

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI  60
EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV  120
FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQPVGCDVSP MALAEAAVSS DDFERHGRNK  180
VVIDEFGYED LLRRRHTGHE SQNDADDAEQ HGREVREGEY EDLILMRHRD TSHELLQDDA  240
RRRRADAEAE QQGGDGEVRD EYEDYLCRQL GAVYSGPDQI YEHDMRGPEP AHSPNTPDQI  300
YVPCERMLPY PSNCDNAEDR IHMACLALKN LVKDMEGIYS PRGTLWQYLE DVISLAHALF  360
LENTKLHRFT DQASHQDLPL QPPQGFPFQQ QPQHDGYQQP GVPFQQPQQG GYYGHGQGIM  420
FQRGGYLQDV PFQHWQWQQG GYGQGFMFPQ AQHQGGYGQG FLSEQPLPGD PSFMNMQAPY  480
YGDGGVLFQK PQHYHHGHVP SEKGAIQAKG KQKMREPKTV MCPDWCRTGH CSSGDGCEYA  540
HSQDELRVID AGPKYRTEPC RYWLAGKGCW YGDKCRYKHS TD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	5e-15	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G20930.1