PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G19430.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 536aa MW: 56865.8 Da PI: 9.6346

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G19430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.5e-06	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H ONIVA08G19430.1 65 YVCEICNQGFQRDQNLQMHRRRH 87 9*********************9 PP
2	zf-C2H2	11.7	0.00082	144	165	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ ONIVA08G19430.1 144 ACSRCSKAYAVHSDYKAHLKTC 165 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MLSSCAPTAV PPQDASGAAT EPFRSLQIAT AGAAAKKKRR PAGTPDPDAE VVSLSPRTLL 60 ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS 120 HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH TCDCGRVFSR 180 VESFIEHQDA CNAGRPRAAE ASSSPGRGGG VVVGAPAAAS SSQQQQQQQL FAVPASLSRT 240 ASSASPSSDL VVSPVAWPAT GGGGPAMASP RAAAPAPAGG SIAAFHHRFT DPALSPPTPC 300 GGRRGGCHTT HSLELQLMPP RTTTTCAGGS LGGTPVATAV GYYASSSPHS PAAALPSRQP 360 VADAMRLQLS IGFGGARDDG NNNSSSSSGE VSASATRLKE AAHEQLRLAM AEKAAADEAR 420 AQAKRQAELA DQELATARRM RYQAQVELSR AHVLRDHAIR QVDATQLQIT CYSCRHKFRA 480 RAAAMISSDV ASYVSSIVTE GGDAEVDNDG NLHRRRLNAD DGMPRGHSRT MAMDLN

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MLSSCAPTAV PPQDASGAAT EPFRSLQIAT AGAAAKKKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS  120
HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH TCDCGRVFSR  180
VESFIEHQDA CNAGRPRAAE ASSSPGRGGG VVVGAPAAAS SSQQQQQQQL FAVPASLSRT  240
ASSASPSSDL VVSPVAWPAT GGGGPAMASP RAAAPAPAGG SIAAFHHRFT DPALSPPTPC  300
GGRRGGCHTT HSLELQLMPP RTTTTCAGGS LGGTPVATAV GYYASSSPHS PAAALPSRQP  360
VADAMRLQLS IGFGGARDDG NNNSSSSSGE VSASATRLKE AAHEQLRLAM AEKAAADEAR  420
AQAKRQAELA DQELATARRM RYQAQVELSR AHVLRDHAIR QVDATQLQIT CYSCRHKFRA  480
RAAAMISSDV ASYVSSIVTE GGDAEVDNDG NLHRRRLNAD DGMPRGHSRT MAMDLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	40	KKKRR
2	36	41	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	6e-97	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G19430.1