PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G14880.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 456aa MW: 48716.5 Da PI: 4.3997

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G14880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.1	3.4e-39	87	185	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e +dam++l+y+Ae+ra+dPv G+++vi +l++qle ael ONIVA08G14880.1 87 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAEL 180 7********************************************************************************************* PP DUF260 95 allke 99 +++ + ONIVA08G14880.1 181 NTVLH 185 98866 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MTSTTTITTT NTTTTTNNNN NNPVSTTTTT TASHQRQSLP VAARPPHSSG SGSGSGGSHR 60 DASGGGSGGG GGGGGGGGGG GGGTNQACAA CKYQRRKCNP DCPMAPYFPA DQQRRFLNAH 120 RLFGVSNILK TLRHLKPELC DDAMRTLIYQ AEMRAHDPVG GCCRVICDLE RQLELDTAEL 180 NTVLHHLAMC RQAAAAGASG SVAATLPAGV LDDACADLDV TSSNQPLLLS AEHEVVDALY 240 ANQEADAAIL HADGHHNQEE SQREHHHGQP QQLYDYFYYD STAGDDVSSK PNLDINVDGM 300 QHFDFDTNYD AEHKVELTSD HQMPVGVDEH NQIDDKGFEI KSGPSLVDVF DLRQEEEQVQ 360 TVDVNTDIEV KEMVDMNADI DVKTMVDENS NIDIIKTMVD VNADIVDVVK TVVDVNGDIG 420 VKEELPELEN GKIIAGDATQ MAESSHCILG LGVSSF

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MTSTTTITTT NTTTTTNNNN NNPVSTTTTT TASHQRQSLP VAARPPHSSG SGSGSGGSHR  60
DASGGGSGGG GGGGGGGGGG GGGTNQACAA CKYQRRKCNP DCPMAPYFPA DQQRRFLNAH  120
RLFGVSNILK TLRHLKPELC DDAMRTLIYQ AEMRAHDPVG GCCRVICDLE RQLELDTAEL  180
NTVLHHLAMC RQAAAAGASG SVAATLPAGV LDDACADLDV TSSNQPLLLS AEHEVVDALY  240
ANQEADAAIL HADGHHNQEE SQREHHHGQP QQLYDYFYYD STAGDDVSSK PNLDINVDGM  300
QHFDFDTNYD AEHKVELTSD HQMPVGVDEH NQIDDKGFEI KSGPSLVDVF DLRQEEEQVQ  360
TVDVNTDIEV KEMVDMNADI DVKTMVDENS NIDIIKTMVD VNADIVDVVK TVVDVNGDIG  420
VKEELPELEN GKIIAGDATQ MAESSHCILG LGVSSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-37	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G14880.1