PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G12870.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 455aa MW: 49457.6 Da PI: 6.0763

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G12870.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.4	6.3e-30	6	93	1	78
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavg 78 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ + p +++ da+sslvyeA+ r+rdPvyG+vg ONIVA08G12870.2 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCVG 93 7*******************************************976555555555588899********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL 60 PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CVGPGPSPSC RTRCHSCRCS SPSHRARSSA 120 ARCSTAMATR TRRMTTQRKI LGYATGCHLP SPLVPRSAGP CSGFPSIVGS EGVLREGGAG 180 MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP SGEEQKGENK ANAFGKDEKP 240 TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI DDTLEHREEG VAEVDMQDKL 300 TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV GRIVISNSPN GNQDLLLDLK 360 GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV EGTLDGFTFD SDEEGDKLPE 420 PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL  60
PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CVGPGPSPSC RTRCHSCRCS SPSHRARSSA  120
ARCSTAMATR TRRMTTQRKI LGYATGCHLP SPLVPRSAGP CSGFPSIVGS EGVLREGGAG  180
MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP SGEEQKGENK ANAFGKDEKP  240
TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI DDTLEHREEG VAEVDMQDKL  300
TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV GRIVISNSPN GNQDLLLDLK  360
GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV EGTLDGFTFD SDEEGDKLPE  420
PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-42	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G12870.2