PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G12870.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 475aa MW: 51926.3 Da PI: 4.8247

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G12870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.2	8.2e-31	6	110	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ + p +++ da+sslvyeA+ r+rdPvyG+ + +++lq ONIVA08G12870.1 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCNQ-VSQLQ 98 7*******************************************976555555555588899********************76.67899 PP DUF260 85 qqleqlkaelal 96 ql+ ++ e+ ONIVA08G12870.1 99 MQLAVAQGEILC 110 999988887755 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL 60 PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CNQVSQLQMQ LAVAQGEILC SQMQHCDGNE 120 NEENVVPRRR QVLLPAQLVS PYGVDTVCRR REPGTTQRKI LGYATGCHLP SPLVPRSAGP 180 CSGFPSIVGS EGVLREGGAG MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP 240 SGEEQKGENK ANAFGKDEKP TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI 300 DDTLEHREEG VAEVDMQDKL TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV 360 GRIVISNSPN GNQDLLLDLK GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV 420 EGTLDGFTFD SDEEGDKLPE PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL  60
PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CNQVSQLQMQ LAVAQGEILC SQMQHCDGNE  120
NEENVVPRRR QVLLPAQLVS PYGVDTVCRR REPGTTQRKI LGYATGCHLP SPLVPRSAGP  180
CSGFPSIVGS EGVLREGGAG MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP  240
SGEEQKGENK ANAFGKDEKP TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI  300
DDTLEHREEG VAEVDMQDKL TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV  360
GRIVISNSPN GNQDLLLDLK GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV  420
EGTLDGFTFD SDEEGDKLPE PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-52	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G12870.1