PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G04680.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 418aa MW: 42580.6 Da PI: 6.5503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G04680.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00023	301	340	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++ L++l+ + +K + a++L +++eYIk L ONIVA08G04680.2 301 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 340 556667777777888888887.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MADHQEMIHA AAAPVMYSGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF 60 GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGVAD PAAIAVHAQT 120 VAGGGGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHQI NTPSLMSNSS SNNGVMLQEH 180 QHDQNYQFLS NLGFELLSSP TSPYGGGGGF RSSLLRSLTE PAAAAKPNDS PGFQQYHHHQ 240 PAMNLQPPAA AAGREPLQFT NSTAAPFWNP SSGFTVAAEG TALGGAGASP AQPTPASLAA 300 KVRKEKLGDR VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP YLKNRQQVPH 360 LKNSTGVDND GGGGGEATAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MADHQEMIHA AAAPVMYSGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGVAD PAAIAVHAQT  120
VAGGGGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHQI NTPSLMSNSS SNNGVMLQEH  180
QHDQNYQFLS NLGFELLSSP TSPYGGGGGF RSSLLRSLTE PAAAAKPNDS PGFQQYHHHQ  240
PAMNLQPPAA AAGREPLQFT NSTAAPFWNP SSGFTVAAEG TALGGAGASP AQPTPASLAA  300
KVRKEKLGDR VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP YLKNRQQVPH  360
LKNSTGVDND GGGGGEATAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	7e-37	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G04680.2