PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 367aa    MW: 37957.8 Da    PI: 7.2569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03600.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-1088113127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f++ GtC+y  +C+FaHg+
  ONIVA08G03600.1  88 FKTKLCCKFRA-GTCPYVTNCNFAHGM 113
                      69*********.*************95 PP

2zf-CCCH17.95.3e-06170195126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd C+F H+
  ONIVA08G03600.1 170 YKGRHCKKFYTDEGCPYGDACTFLHD 195
                      77888********************7 PP

3zf-CCCH43.35.8e-14246271126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  ONIVA08G03600.1 246 WKTRICNKWEMTGYCPFGSKCHFAHG 271
                      8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG SSRAGSEQPP  60
PGKKSRGGGG GEGGGNTSKS RAIGKMFFKT KLCCKFRAGT CPYVTNCNFA HGMEELRKPP  120
PNWQEIVAAH EEATEAREEH QIPIMTSSGP TAGGDAGCGG GGGGGSGRAY KGRHCKKFYT  180
DEGCPYGDAC TFLHDEQSKA RESVAISLSP SVGGGGGGGS YNSAAAAAAS ASAAAGNGPM  240
QKPSNWKTRI CNKWEMTGYC PFGSKCHFAH GAAELHKYGG GLVDIDSRDA AATPDSKQAV  300
VSAKAPAETA AASTTVLPHA DVYHLGVQAQ RSTIAGQRSG QVQRPIQKWK GPDKISRIYG  360
DWIDETE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-93C3H family protein