PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G03570.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 184aa MW: 19033.1 Da PI: 7.8316

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G03570.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.6	4.7e-14	68	92	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV ONIVA08G03570.3 68 CSGCRNLLMYPAGATSVCCAVCSTV 92 ***********************99 PP
2	zf-LSD1	46.3	6.9e-15	107	131	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV ONIVA08G03570.3 107 CGGCHTLLMYIRGATSVQCSCCHTV 131 ************************9 PP
3	zf-LSD1	41.4	2.4e-13	145	169	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V ONIVA08G03570.3 145 CGNCRMLLMYQYGARSVKCAVCNFV 169 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MHLSAGFLSC RERKGDFSCL TAARICEAST SDAVVQAAGT AMPVPLAPYP TPPVPFTPPN 60 GAQSQLVCSG CRNLLMYPAG ATSVCCAVCS TVTAVPAPGT EMAQLVCGGC HTLLMYIRGA 120 TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS VKCAVCNFVT SVGASPGIDQ 180 KPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-60	LSD family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G03570.3