PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G03570.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18062 Da PI: 7.6708 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.7 | 4.4e-14 | 59 | 83 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV ONIVA08G03570.2 59 CSGCRNLLMYPAGATSVCCAVCSTV 83 ***********************99 PP | |||||||
2 | zf-LSD1 | 46.4 | 6.4e-15 | 98 | 122 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV ONIVA08G03570.2 98 CGGCHTLLMYIRGATSVQCSCCHTV 122 ************************9 PP | |||||||
3 | zf-LSD1 | 41.5 | 2.2e-13 | 136 | 160 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V ONIVA08G03570.2 136 CGNCRMLLMYQYGARSVKCAVCNFV 160 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MTERKGDFSC LTAARICEAS TSDAVVQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS 60 GCRNLLMYPA GATSVCCAVC STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH 120 TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV TSVGASPGID QKPSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-60 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA08G03570.2 |