PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03570.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 175aa    MW: 18062 Da    PI: 7.6708
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03570.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.74.4e-145983125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP+GA+sV+Ca+C tV
  ONIVA08G03570.2 59 CSGCRNLLMYPAGATSVCCAVCSTV 83
                     ***********************99 PP

2zf-LSD146.46.4e-1598122125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggC+tlL+Y rGA+sV+C++C+tV
  ONIVA08G03570.2  98 CGGCHTLLMYIRGATSVQCSCCHTV 122
                      ************************9 PP

3zf-LSD141.52.2e-13136160125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  ONIVA08G03570.2 136 CGNCRMLLMYQYGARSVKCAVCNFV 160
                      ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MTERKGDFSC LTAARICEAS TSDAVVQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS  60
GCRNLLMYPA GATSVCCAVC STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH  120
TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV TSVGASPGID QKPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-60LSD family protein