PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 215aa    MW: 22490.5 Da    PI: 7.9433
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03570.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.35.9e-1499123125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C+gCr+lL+YP+GA+sV+Ca+C tV
  ONIVA08G03570.1  99 CSGCRNLLMYPAGATSVCCAVCSTV 123
                      ***********************99 PP

2zf-LSD1468.6e-15138162125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggC+tlL+Y rGA+sV+C++C+tV
  ONIVA08G03570.1 138 CGGCHTLLMYIRGATSVQCSCCHTV 162
                      ************************9 PP

3zf-LSD141.13e-13176200125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  ONIVA08G03570.1 176 CGNCRMLLMYQYGARSVKCAVCNFV 200
                      ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTSVKCTIPI PMLLMDYILS QAVVLVQKIL LMHLSAGFLS CRERKGDFSC LTAARICEAS  60
TSDAVVQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS GCRNLLMYPA GATSVCCAVC  120
STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR  180
MLLMYQYGAR SVKCAVCNFV TSVGASPGID QKPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-60LSD family protein